myRT

myRT report for GCA_009680105.1_ASM968010v1

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Seq: WKQN01000001.1 Faecalibacterium prausnitzii strain BIOML-A1 scaffold1_size445298, whole genome shotgun sequence (445298 bp)
Overview 1 RT 1: 154081-159317 bp Neighborhood of RT #1 [154081, 159317] FN3 FN3 RVT-DGRs Avd_like Feature: gene Location: 154081-154224 bp Feature: gene Location: 154281-156134 bp Feature: domain Description: FN3 Location: 154956-155235 bp Feature: domain Description: FN3 Location: 1 54956-1 55235 bp Feature: domain Description: FN3 Location: 155253-155505 bp Feature: domain Description: FN3 Location: 1 55253-1 55505 bp Feature: gene Location: 156158-157348 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 156353-156962 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 56353-1 56962 bp Feature: gene Location: 157584-158378 bp Feature: domain Description: Avd_like Location: 157815-158094 bp Feature: domain Description: Avd_like Location: 1 5781 5-1 58094 bp Feature: gene Location: 158589-159317 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FN3 (smart00060), RVT-DGRs, Avd_like (cd16376)

Seq: WKQN01000004.1 Faecalibacterium prausnitzii strain BIOML-A1 scaffold4_size332165, whole genome shotgun sequence (332282 bp)
Overview 1 RT 1: 21328-26810 bp 2 RT 2: 209888-215054 bp Neighborhood of RT #1 [21328, 26810] DUF3851 TraC-F-type RVT_N RVT-GII GIIM VirB4 TraC-F-type Neighborhood of RT #2 [209888, 215086] DUF2313 DUF3751 RVT-DGRs Phage_holin_4_1 Feature: gene Location: 21328-21708 bp Feature: domain Description: DUF3851 Location: 21334-21706 bp Feature: domain Description: DUF3851 Location: 2 1334-2 1706 bp Feature: gene Location: 21708-22712 bp Feature: domain Description: TraC-F-type Location: 21792-22509 bp Feature: domain Description: TraC-F-type Location: 2 1792 -2 2 509 bp Feature: gene Location: 22717-24399 bp Feature: RT Description: RVT_N Location: 22795-23038 bp Feature: RT Description: RVT_N Location: 2 2 795-2 3038 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23083-23746 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3083-2 3746 bp Feature: domain Description: GIIM Note: maturase Location: 23797-24034 bp Feature: domain Description: GIIM Note: maturase Location: 2 3797-2 4034 bp Feature: gene Location: 24926-26491 bp Feature: domain Description: VirB4 Location: 25064-25289 bp Feature: domain Description: VirB4 Location: 2 5064-2 52 89 bp Feature: domain Description: TraC-F-type Location: 25808-26420 bp Feature: domain Description: TraC-F-type Location: 2 5808-2 642 0 bp Feature: gene Location: 26622-26810 bp Feature: gene Location: 209888-210634 bp Feature: domain Description: DUF2313 Location: 209903-210287 bp Feature: domain Description: DUF2 313 Location: 2 09903-2 102 87 bp Feature: gene Location: 210654-212453 bp Feature: domain Description: DUF3751 Location: 210672-211104 bp Feature: domain Description: DUF3751 Location: 2 10672 -2 11104 bp Feature: gene Location: 212860-213972 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 213064-213727 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2 13064-2 1372 7 bp Feature: gene Location: 213975-214238 bp Feature: gene Location: 214655-215086 bp Feature: domain Description: Phage_holin_4_1 Location: 214700-215054 bp Feature: domain Description: Phage_holin_4_1 Location: 2 14700-2 15054 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3851 (pfam12962), TraC-F-type (TIGR02746), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), VirB4 (COG3451), DUF2313 (pfam10076), DUF3751 (pfam12571), RVT-DGRs, Phage_holin_4_1 (pfam05105)