myRT

myRT report for GCA_009680145.1_ASM968014v1

Download annotations/find similar RTs

Seq: WKZL01000010.1 Eubacterium sp. BIOML-A1 scaffold10_size85818, whole genome shotgun sequence (85818 bp)
Overview 1 RT 1: 18741-25003 bp Neighborhood of RT #1 [18741, 25008] MFS_MelB_like DHAK_reg RVT-GII GIIM benzyl_alcohol_DH CaiD Feature: gene Location: 18741-20144 bp Feature: domain Description: MFS_MelB_like Location: 18813-20082 bp Feature: domain Description: MFS_MelB_like Location: 1 881 3-20082 bp Feature: gene Location: 20306-20920 bp Feature: domain Description: DHAK_reg Location: 20324-20663 bp Feature: domain Description: DHAK_reg Location: 20324-20663 bp Feature: gene Location: 21500-22792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21701-22319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 701 -2231 9 bp Feature: domain Description: GIIM Note: maturase Location: 22373-22577 bp Feature: domain Description: GIIM Note: maturase Location: 22373-22577 bp Feature: gene Location: 23080-24201 bp Feature: domain Description: benzyl_alcohol_DH Location: 23092-24184 bp Feature: domain Description: benzyl_alcohol_DH Location: 23092-241 84 bp Feature: gene Location: 24238-25008 bp Feature: domain Description: CaiD Location: 24244-25003 bp Feature: domain Description: CaiD Location: 24244-25003 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MFS_MelB_like (cd17332), DHAK_reg (TIGR02366), RVT-GII, GIIM (pfam08388), benzyl_alcohol_DH (cd08278), CaiD (COG1024)

Seq: WKZL01000130.1 Eubacterium sp. BIOML-A1 scaffold130_size1898, whole genome shotgun sequence (1898 bp)
Overview 1 RT 1: 139-1731 bp Neighborhood of RT #1 [139, 1799] RVT-GII GIIM Feature: gene Location: 139-306 bp Feature: gene Location: 501-1799 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756-1446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 756-1446 bp Feature: domain Description: GIIM Note: maturase Location: 1527-1731 bp Feature: domain Description: GIIM Note: maturase Location: 152 7-1731 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WKZL01000001.1 Eubacterium sp. BIOML-A1 scaffold1_size178695, whole genome shotgun sequence (178695 bp)
Overview 1 RT 1: 157190-164032 bp Neighborhood of RT #1 [157190, 164032] RVT-GII Intron_maturas2 T4SS-DNA_transf RVT-GII Intron_maturas2 HNHc Feature: gene Location: 157190-157453 bp Feature: gene Location: 157487-157654 bp Feature: gene Location: 157863-159674 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158127-158958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158127-158958 bp Feature: domain Description: Intron_maturas2 Location: 159027-159354 bp Feature: domain Description: Intron_maturas2 Location: 159027-1593 54 bp Feature: gene Location: 159676-159813 bp Feature: gene Location: 159847-160035 bp Feature: gene Location: 160270-161064 bp Feature: domain Description: T4SS-DNA_transf Location: 160312-161053 bp Feature: domain Description: T4SS-DNA_transf Location: 1603 12-161053 bp Feature: gene Location: 161155-162972 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161419-162238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 161419-16223 8 bp Feature: domain Description: Intron_maturas2 Location: 162310-162613 bp Feature: domain Description: Intron_maturas2 Location: 1623 10-162613 bp Feature: domain Description: HNHc Note: nucleases Location: 162793-162937 bp Feature: domain Description: HNHc Note: nucleases Location: 162793 -16293 7 bp Feature: gene Location: 163259-163399 bp Feature: gene Location: 163532-164032 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), T4SS-DNA_transf (pfam02534), HNHc (smart00507)

Seq: WKZL01000046.1 Eubacterium sp. BIOML-A1 scaffold46_size39693, whole genome shotgun sequence (39693 bp)
Overview 1 RT 1: 15793-27915 bp Neighborhood of RT #1 [15793, 28370] DUF3848 DUF3849 KOG1000 RVT-GII HNHc PRK05399 YtxK COG4646 Feature: gene Location: 15793-16611 bp Feature: domain Description: DUF3848 Location: 15811-16090 bp Feature: domain Description: DUF384 8 Location: 15811-16090 bp Feature: domain Description: DUF3849 Location: 16129-16489 bp Feature: domain Description: DUF384 9 Location: 16129-164 89 bp Feature: gene Location: 16613-17716 bp Feature: domain Description: KOG1000 Location: 16718-16916 bp Feature: domain Description: KOG1000 Location: 16718-16916 bp Feature: gene Location: 17769-19619 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18069-18810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18069-18810 bp Feature: domain Description: HNHc Note: nucleases Location: 19368-19497 bp Feature: domain Description: HNHc Note: nucleases Location: 19368-194 97 bp Feature: gene Location: 19790-19969 bp Feature: gene Location: 20316-28370 bp Feature: domain Description: PRK05399 Location: 22626-22839 bp Feature: domain Description: PRK05399 Location: 22626-22839 bp Feature: domain Description: YtxK Location: 24879-25266 bp Feature: domain Description: YtxK Location: 24 879-25266 bp Feature: domain Description: COG4646 Location: 25335-27915 bp Feature: domain Description: COG4 64 6 Location: 25335-27915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3848 (pfam12959), DUF3849 (pfam12960), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), RVT-GII, HNHc (smart00507), PRK05399 (DNA mismatch repair protein MutS; Provisional), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class )

Seq: WKZL01000052.1 Eubacterium sp. BIOML-A1 scaffold52_size42810, whole genome shotgun sequence (43306 bp)
Overview 1 RT 1: 34855-38382 bp Neighborhood of RT #1 [34855, 38471] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 Feature: gene Location: 34855-35997 bp Feature: domain Description: PHA00653 Location: 34978-35995 bp Feature: domain Description: PHA0065 3 Location: 34978-35 995 bp Feature: gene Location: 36038-36394 bp Feature: domain Description: Avd_like Location: 36068-36371 bp Feature: domain Description: Avd_like Location: 36068-36371 bp Feature: gene Location: 36721-37782 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 36958-37579 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3695 8-375 79 bp Feature: gene Location: 37807-37986 bp Feature: gene Location: 37983-38471 bp Feature: domain Description: Phage_holin_4_1 Location: 38022-38382 bp Feature: domain Description: Phage_holin_4_1 Location: 38022-38382 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105)