myRT

myRT report for GCA_009680405.1_ASM968040v1

Download annotations/find similar RTs

Seq: WKRA01000014.1 Eubacterium ramulus strain BIOML-A3 scaffold14_size81648, whole genome shotgun sequence (81648 bp)
Overview 1 RT 1: 60647-63247 bp Neighborhood of RT #1 [60647, 63247] Avd_like RVT-DGRs XhlA Feature: gene Location: 60647-61051 bp Feature: domain Description: Avd_like Location: 60734-61040 bp Feature: domain Description: Avd_like Location: 60734-61 040 bp Feature: gene Location: 61056-61211 bp Feature: gene Location: 61350-62402 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61560-62166 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 61 560-621 66 bp Feature: gene Location: 62658-62894 bp Feature: domain Description: XhlA Location: 62739-62880 bp Feature: domain Description: XhlA Location: 62739-62880 bp Feature: gene Location: 62891-63247 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, XhlA (pfam10779)

Seq: WKRA01000029.1 Eubacterium ramulus strain BIOML-A3 scaffold29_size42612, whole genome shotgun sequence (42388 bp)
Overview 1 RT 1: 40136-42065 bp Neighborhood of RT #1 [40136, 42238] RVT-GII GIIM Feature: gene Location: 40136-40351 bp Feature: gene Location: 40590-40736 bp Feature: gene Location: 40844-42238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41162-41786 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41162 -41786 bp Feature: domain Description: GIIM Note: maturase Location: 41843-42065 bp Feature: domain Description: GIIM Note: maturase Location: 41843-42 065 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WKRA01000004.1 Eubacterium ramulus strain BIOML-A3 scaffold4_size199645, whole genome shotgun sequence (199645 bp)
Overview 1 RT 1: 148977-153412 bp Neighborhood of RT #1 [148977, 153435] RVT-DGRs Phage_holin_4_1 Feature: gene Location: 148977-150782 bp Feature: gene Location: 150909-151061 bp Feature: gene Location: 151067-152359 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 151373-152075 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1513 73 -152075 bp Feature: gene Location: 152601-152735 bp Feature: gene Location: 153013-153435 bp Feature: domain Description: Phage_holin_4_1 Location: 153058-153412 bp Feature: domain Description: Phage_holin_4_1 Location: 153 058-153 412 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_holin_4_1 (pfam05105)

Seq: WKRA01000009.1 Eubacterium ramulus strain BIOML-A3 scaffold9_size127668, whole genome shotgun sequence (127542 bp)
Overview 1 RT 1: 79060-84642 bp 2 RT 2: 93639-105586 bp Neighborhood of RT #1 [79060, 84644] RVT-GII HNHc TraC-F-type DUF3851 Neighborhood of RT #2 [93639, 105678] YtxK COG4646 RVT-GII Intron_maturas2 HNHc KOG1000 DUF3848 DUF3849 Feature: gene Location: 79060-80034 bp Feature: gene Location: 80106-80405 bp Feature: gene Location: 80758-82731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81094-81832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81094 -81832 bp Feature: domain Description: HNHc Note: nucleases Location: 82387-82525 bp Feature: domain Description: HNHc Note: nucleases Location: 82387-82525 bp Feature: gene Location: 82867-84264 bp Feature: domain Description: TraC-F-type Location: 82891-84064 bp Feature: domain Description: TraC-F-type Location: 82891-84 064 bp Feature: gene Location: 84267-84644 bp Feature: domain Description: DUF3851 Location: 84270-84642 bp Feature: domain Description: DUF3851 Location: 84 270-84 64 2 bp Feature: gene Location: 93639-101000 bp Feature: domain Description: YtxK Location: 97710-98385 bp Feature: domain Description: YtxK Location: 97710-98385 bp Feature: domain Description: COG4646 Location: 98454-100869 bp Feature: domain Description: COG4 64 6 Location: 984 54 -100869 bp Feature: gene Location: 101171-101416 bp Feature: gene Location: 101491-103278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101761-102553 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101761-102553 bp Feature: domain Description: Intron_maturas2 Location: 102658-102871 bp Feature: domain Description: Intron_maturas2 Location: 102658-102871 bp Feature: domain Description: HNHc Note: nucleases Location: 103054-103240 bp Feature: domain Description: HNHc Note: nucleases Location: 103054 -10324 0 bp Feature: gene Location: 103431-104870 bp Feature: domain Description: KOG1000 Location: 103866-104070 bp Feature: domain Description: KOG1000 Location: 103866-104 070 bp Feature: gene Location: 104872-105678 bp Feature: domain Description: DUF3848 Location: 104890-105169 bp Feature: domain Description: DUF384 8 Location: 104 890-105169 bp Feature: domain Description: DUF3849 Location: 105205-105586 bp Feature: domain Description: DUF384 9 Location: 105205-105586 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507), TraC-F-type (TIGR02746), DUF3851 (pfam12962), Intron_maturas2 (pfam01348), KOG1000 (KOG1000, Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily ), DUF3848 (pfam12959), DUF3849 (pfam12960), YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class )