myRT

myRT report for GCA_009687845.1_ASM968784v1

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Seq: BLAD01000038.1 Acrocarpospora corrugata NBRC 13972 DNA, sequence038, whole genome shotgun sequence (291951 bp)
Overview 1 RT 1: 275617-281574 bp Neighborhood of RT #1 [275617, 281594] CE4_DAC_u3_5s rpsA RVT-GII GIIM Acetyltransf_1 coaE Feature: gene Location: 275617-276690 bp Feature: domain Description: CE4_DAC_u3_5s Location: 275992-276634 bp Feature: domain Description: CE4_DAC_u3_5s Location: 275992-276634 bp Feature: gene Location: 276878-278344 bp Feature: domain Description: rpsA Location: 276896-278336 bp Feature: domain Description: rpsA Location: 276896-278336 bp Feature: gene Location: 279336-280247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279348-279792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 279348-279792 bp Feature: domain Description: GIIM Note: maturase Location: 279849-280074 bp Feature: domain Description: GIIM Note: maturase Location: 279849-280074 bp Feature: gene Location: 280498-281004 bp Feature: domain Description: Acetyltransf_1 Location: 280648-280927 bp Feature: domain Description: Acetyltransf_1 Location: 280648-280927 bp Feature: gene Location: 281001-281594 bp Feature: domain Description: coaE Location: 281004-281574 bp Feature: domain Description: coaE Location: 281 004-281 574 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CE4_DAC_u3_5s (cd10972), rpsA (TIGR00717), RVT-GII, GIIM (pfam08388), Acetyltransf_1 (pfam00583), coaE (PRK14734)

Seq: BLAD01000099.1 Acrocarpospora corrugata NBRC 13972 DNA, sequence099, whole genome shotgun sequence (41406 bp)
Overview 1 RT 1: 27591-33410 bp Neighborhood of RT #1 [27591, 33410] PinE Zn_ribbon_recom excise excise RVT-GII GIIM AbiJ_NTD3 Feature: gene Location: 27591-27941 bp Feature: gene Location: 28030-30342 bp Feature: domain Description: PinE Location: 28090-28666 bp Feature: domain Description: PinE Location: 2 8090-2 8666 bp Feature: domain Description: Zn_ribbon_recom Location: 29029-29194 bp Feature: domain Description: Zn_ribbon_recom Location: 2 902 9-2 9194 bp Feature: domain Description: excise Location: 29881-29992 bp Feature: domain Description: excise Location: 2 9881-2 9992 bp Feature: domain Description: excise Location: 30130-30229 bp Feature: domain Description: excise Location: 30130-302 2 9 bp Feature: gene Location: 30452-31567 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30482-31136 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30482 -31136 bp Feature: domain Description: GIIM Note: maturase Location: 31205-31427 bp Feature: domain Description: GIIM Note: maturase Location: 312 05-3142 7 bp Feature: gene Location: 31676-32746 bp Feature: domain Description: AbiJ_NTD3 Location: 31721-32216 bp Feature: domain Description: AbiJ_NTD3 Location: 3172 1-32 2 16 bp Feature: gene Location: 32889-33410 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), Zn_ribbon_recom (pfam13408), excise (TIGR01764), RVT-GII, GIIM (pfam08388), AbiJ_NTD3 (pfam18860)

Seq: BLAD01000124.1 Acrocarpospora corrugata NBRC 13972 DNA, sequence124, whole genome shotgun sequence (17619 bp)
Overview 1 RT 1: 11367-17190 bp Neighborhood of RT #1 [11367, 17258] TIR-like RVT_N RVT-GII GIIM HTH_32 DDE_3 Feature: gene Location: 11367-13061 bp Feature: domain Description: TIR-like Location: 12507-12900 bp Feature: domain Description: TIR-like Location: 12507-12900 bp Feature: gene Location: 13593-13883 bp Feature: gene Location: 13880-15667 bp Feature: RT Description: RVT_N Location: 13955-14192 bp Feature: RT Description: RVT_N Location: 13 955-14192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14252-14903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14252-14903 bp Feature: domain Description: GIIM Note: maturase Location: 14957-15188 bp Feature: domain Description: GIIM Note: maturase Location: 14957-15188 bp Feature: gene Location: 15627-15848 bp Feature: gene Location: 16272-17258 bp Feature: domain Description: HTH_32 Location: 16464-16710 bp Feature: domain Description: HTH_3 2 Location: 16464-16710 bp Feature: domain Description: DDE_3 Location: 16836-17190 bp Feature: domain Description: DDE_3 Location: 1683 6-17190 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR-like (pfam10137), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HTH_32 (pfam13565), DDE_3 (pfam13358)