myRT

myRT report for GCA_009690905.1_ASM969090v1

Download annotations/find similar RTs

Seq: VOSW01000107.1 Paraburkholderia sp. RP11 NODE_107_length_30799_cov_6.581182, whole genome shotgun sequence (30799 bp)
Overview 1 RT 1: 25313-29327 bp Neighborhood of RT #1 [25313, 29524] RVT-GII GIIM HNHc Dam YiaA Feature: gene Location: 25313-25756 bp Feature: gene Location: 25894-27396 bp Feature: gene Location: 27841-28632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27844-27910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 27844-2791 0 bp Feature: domain Description: GIIM Note: maturase Location: 27961-28195 bp Feature: domain Description: GIIM Note: maturase Location: 27961 -281 95 bp Feature: domain Description: HNHc Note: nucleases Location: 28441-28576 bp Feature: domain Description: HNHc Note: nucleases Location: 28441 -28576 bp Feature: gene Location: 28685-28894 bp Feature: domain Description: Dam Location: 28706-28883 bp Feature: domain Description: Dam Location: 28706-28883 bp Feature: gene Location: 28955-29524 bp Feature: domain Description: YiaA Location: 28958-29327 bp Feature: domain Description: YiaA Location: 28958-29327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HNHc (smart00507), Dam (pfam05869), YiaA (COG4682)

Seq: VOSW01000016.1 Paraburkholderia sp. RP11 NODE_16_length_117959_cov_8.922610, whole genome shotgun sequence (117959 bp)
Overview 1 RT 1: 7899-12380 bp Neighborhood of RT #1 [7899, 12382] RVT-Retrons COG4924 Feature: gene Location: 7899-8636 bp Feature: gene Location: 8680-9381 bp Feature: gene Location: 9454-10911 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10033-10672 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 10033-10672 bp Feature: gene Location: 11010-11147 bp Feature: gene Location: 11207-12382 bp Feature: domain Description: COG4924 Location: 11216-12380 bp Feature: domain Description: COG492 4 Location: 112 16-12 380 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, COG4924 (Uncharacterized protein )

Seq: VOSW01000174.1 Paraburkholderia sp. RP11 NODE_174_length_11656_cov_11.642120, whole genome shotgun sequence (11656 bp)
Overview 1 RT 1: 4881-7707 bp Neighborhood of RT #1 [4881, 7799] RVT-GII RVT-GII antidote_HigA Feature: gene Location: 4881-5036 bp Feature: gene Location: 5048-5311 bp Feature: gene Location: 5319-5942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5346-5562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 53 46-5562 bp Feature: gene Location: 5828-6796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6239-6692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623 9-6692 bp Feature: gene Location: 6839-7228 bp Feature: gene Location: 7365-7799 bp Feature: domain Description: antidote_HigA Location: 7485-7707 bp Feature: domain Description: antidote_HigA Location: 7485-7707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, antidote_HigA (TIGR02607)

Seq: VOSW01000196.1 Paraburkholderia sp. RP11 NODE_196_length_7423_cov_7.104030, whole genome shotgun sequence (7423 bp)
Overview 1 RT 1: 4661-7238 bp Neighborhood of RT #1 [4661, 7276] PssA PRK05305 RVT-GII GIIM HNHc Feature: gene Location: 4661-5530 bp Feature: domain Description: PssA Location: 4793-5474 bp Feature: domain Description: PssA Location: 4 793-54 74 bp Feature: gene Location: 5555-6193 bp Feature: domain Description: PRK05305 Location: 5579-6188 bp Feature: domain Description: PRK05305 Location: 5579-6188 bp Feature: gene Location: 6311-7276 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6314-6569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6314 -6569 bp Feature: domain Description: GIIM Note: maturase Location: 6620-6854 bp Feature: domain Description: GIIM Note: maturase Location: 6620-6854 bp Feature: domain Description: HNHc Note: nucleases Location: 7097-7238 bp Feature: domain Description: HNHc Note: nucleases Location: 7097-7238 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PssA (COG1183), PRK05305 (phosphatidylserine decarboxylase family protein), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: VOSW01000246.1 Paraburkholderia sp. RP11 NODE_247_length_2413_cov_15.541120, whole genome shotgun sequence (2413 bp)
Overview 1 RT 1: 142-1765 bp Neighborhood of RT #1 [142, 1794] RVT_N RVT-GII GIIM HNH Feature: gene Location: 142-1794 bp Feature: domain Description: RVT_N Location: 187-430 bp Feature: domain Description: RVT_N Location: 187-430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475-1111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 475 -1111 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: domain Description: GIIM Note: maturase Location: 1162-1396 bp Feature: domain Description: HNH Note: nucleases Location: 1648-1765 bp Feature: domain Description: HNH Note: nucleases Location: 1648-1765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: VOSW01000247.1 Paraburkholderia sp. RP11 NODE_248_length_2330_cov_14.144349, whole genome shotgun sequence (2330 bp)
Overview 1 RT 1: 317-2323 bp Neighborhood of RT #1 [317, 2328] IS5 RVT_N RVT-GII Feature: gene Location: 317-628 bp Feature: gene Location: 773-1357 bp Feature: domain Description: IS5 Location: 950-1313 bp Feature: domain Description: IS5 Location: 950-1313 bp Feature: gene Location: 1915-2328 bp Feature: domain Description: RVT_N Location: 1990-2227 bp Feature: domain Description: RVT_N Location: 1990-2227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2278-2323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2278-2323 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IS5 (COG3039), RVT_N (pfam13655), RVT-GII

Seq: VOSW01000253.1 Paraburkholderia sp. RP11 NODE_254_length_1976_cov_87.113575, whole genome shotgun sequence (1976 bp)
Overview 1 RT 1: 3-1743 bp Neighborhood of RT #1 [3, 1826] RVT-GII GIIM Feature: gene Location: 3-506 bp Feature: gene Location: 519-1826 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 804-1443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 804-1443 bp Feature: domain Description: GIIM Note: maturase Location: 1515-1743 bp Feature: domain Description: GIIM Note: maturase Location: 1515-17 43 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VOSW01000269.1 Paraburkholderia sp. RP11 NODE_270_length_1473_cov_20.708024, whole genome shotgun sequence (1473 bp)
Overview 1 RT 1: 1-1268 bp Neighborhood of RT #1 [1, 1276] RVT-GII GIIM IS5 Feature: gene Location: 1-741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-274 bp Feature: domain Description: GIIM Note: maturase Location: 325-559 bp Feature: domain Description: GIIM Note: maturase Location: 325-559 bp Feature: gene Location: 860-1276 bp Feature: domain Description: IS5 Location: 869-1268 bp Feature: domain Description: IS5 Location: 8 69-1268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), IS5 (COG3039)

Seq: VOSW01000275.1 Paraburkholderia sp. RP11 NODE_276_length_1337_cov_27.509917, whole genome shotgun sequence (1337 bp)
Overview 1 RT 1: 3-1335 bp Neighborhood of RT #1 [3, 1335] RVT_N RVT-GII Feature: gene Location: 3-722 bp Feature: domain Description: RVT_N Location: 66-303 bp Feature: domain Description: RVT_N Location: 66-303 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354-723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354-723 bp Feature: gene Location: 865-1335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: VOSW01000278.1 Paraburkholderia sp. RP11 NODE_279_length_1198_cov_24.519141, whole genome shotgun sequence (1198 bp)
Overview 1 RT 1: 3-1197 bp Neighborhood of RT #1 [3, 1196] RVT-GII Feature: gene Location: 3-302 bp Feature: gene Location: 498-1196 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 789-1197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 789-1197 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VOSW01000298.1 Paraburkholderia sp. RP11 NODE_299_length_796_cov_24.245142, whole genome shotgun sequence (796 bp)
Overview 1 RT 1: 1-795 bp Neighborhood of RT #1 [1, 795] RVT-GII GIIM Feature: gene Location: 1-627 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4-256 bp Feature: domain Description: GIIM Note: maturase Location: 325-541 bp Feature: domain Description: GIIM Note: maturase Location: 325-541 bp Feature: gene Location: 655-795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VOSW01000329.1 Paraburkholderia sp. RP11 NODE_330_length_449_cov_32.456522, whole genome shotgun sequence (449 bp)
Overview 1 RT 1: 3-447 bp Neighborhood of RT #1 [3, 446] RVT-GII GIIM Feature: gene Location: 3-446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-273 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-273 bp Feature: domain Description: GIIM Note: maturase Location: 327-447 bp Feature: domain Description: GIIM Note: maturase Location: 327-447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: VOSW01000033.1 Paraburkholderia sp. RP11 NODE_33_length_89569_cov_7.859361, whole genome shotgun sequence (89569 bp)
Overview 1 RT 1: 81323-84645 bp Neighborhood of RT #1 [81323, 84645] PAS_4 RVT-GII GIIM Feature: gene Location: 81323-81928 bp Feature: domain Description: PAS_4 Location: 81584-81890 bp Feature: domain Description: PAS_4 Location: 81584-81890 bp Feature: gene Location: 82066-82284 bp Feature: gene Location: 82848-84170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83151-83790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83151-83790 bp Feature: domain Description: GIIM Note: maturase Location: 83865-84084 bp Feature: domain Description: GIIM Note: maturase Location: 83865-84084 bp Feature: gene Location: 84260-84442 bp Feature: gene Location: 84481-84645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAS_4 (pfam08448), RVT-GII, GIIM (pfam08388)

Seq: VOSW01000353.1 Paraburkholderia sp. RP11 NODE_354_length_252_cov_18.040000, whole genome shotgun sequence (252 bp)
Overview 1 RT 1: 3-252 bp Neighborhood of RT #1 [3, 251] RVT-GII Feature: gene Location: 3-251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VOSW01000354.1 Paraburkholderia sp. RP11 NODE_355_length_252_cov_15.040000, whole genome shotgun sequence (252 bp)
Overview 1 RT 1: 3-252 bp Neighborhood of RT #1 [3, 251] RVT-GII Feature: gene Location: 3-251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-252 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-252 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VOSW01000365.1 Paraburkholderia sp. RP11 NODE_366_length_250_cov_10.357724, whole genome shotgun sequence (250 bp)
Overview 1 RT 1: 3-135 bp Neighborhood of RT #1 [3, 161] RVT-GII Feature: gene Location: 3-161 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-135 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-135 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VOSW01000368.1 Paraburkholderia sp. RP11 NODE_369_length_250_cov_4.878049, whole genome shotgun sequence (250 bp)
Overview 1 RT 1: 3-246 bp Neighborhood of RT #1 [3, 248] RVT-GII Feature: gene Location: 3-248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75-246 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75-246 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VOSW01000370.1 Paraburkholderia sp. RP11 NODE_371_length_248_cov_7.231405, whole genome shotgun sequence (248 bp)
Overview 1 RT 1: 14-86 bp Neighborhood of RT #1 [14, 247] RVT-GII Feature: gene Location: 14-247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17-86 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17-86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: VOSW01000040.1 Paraburkholderia sp. RP11 NODE_40_length_85441_cov_7.027041, whole genome shotgun sequence (85352 bp)
Overview 1 RT 1: 81657-85235 bp Neighborhood of RT #1 [81657, 85261] ilvH PRK05479 RVT-GII Feature: gene Location: 81657-82148 bp Feature: domain Description: ilvH Location: 81660-82137 bp Feature: domain Description: ilvH Location: 81660-82137 bp Feature: gene Location: 82324-83340 bp Feature: domain Description: PRK05479 Location: 82327-83308 bp Feature: domain Description: PRK05479 Location: 82327-83308 bp Feature: gene Location: 84914-85261 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84917-85235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 84917-85235 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ilvH (PRK11895), PRK05479 (ketol-acid reductoisomerase; Provisional), RVT-GII

Seq: VOSW01000050.1 Paraburkholderia sp. RP11 NODE_50_length_71086_cov_8.046323, whole genome shotgun sequence (71086 bp)
Overview 1 RT 1: 29461-33908 bp Neighborhood of RT #1 [29461, 33908] RVT-G2L4 Feature: gene Location: 29461-29823 bp Feature: gene Location: 30059-31309 bp Feature: gene Location: 31979-32635 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 32030-32126 bp Feature: RT Description: RVT-G2L4 Note: G2L4 RT Location: 320 30-32126 bp Feature: gene Location: 32906-33094 bp Feature: gene Location: 33540-33908 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-G2L4

Seq: VOSW01000070.1 Paraburkholderia sp. RP11 NODE_70_length_48765_cov_7.300938, whole genome shotgun sequence (48765 bp)
Overview 1 RT 1: 37179-40808 bp Neighborhood of RT #1 [37179, 40808] Rve RVT-GII GIIM Rve Feature: gene Location: 37179-37913 bp Feature: domain Description: Rve Location: 37215-37824 bp Feature: domain Description: Rve Location: 3721 5-37824 bp Feature: gene Location: 37881-38306 bp Feature: gene Location: 38506-39810 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38791-39430 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38791-39430 bp Feature: domain Description: GIIM Note: maturase Location: 39505-39724 bp Feature: domain Description: GIIM Note: maturase Location: 39505-39724 bp Feature: gene Location: 39906-40475 bp Feature: domain Description: Rve Location: 40032-40425 bp Feature: domain Description: Rve Location: 40032-40425 bp Feature: gene Location: 40533-40808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, GIIM (pfam08388)