myRT

myRT report for GCA_009696545.1_ASM969654v1

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Seq: VULU01000011.1 Bacteroides vulgatus strain WCA-389-WT-3C seq11, whole genome shotgun sequence (128771 bp)
Overview 1 RT 1: 3-2866 bp Neighborhood of RT #1 [3, 3606] RVT_N RVT-GII GIIM YWFCY Feature: gene Location: 3-152 bp Feature: gene Location: 180-389 bp Feature: gene Location: 394-2046 bp Feature: RT Description: RVT_N Location: 448-691 bp Feature: RT Description: RVT_N Location: 448-691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 736-1384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 736-1 384 bp Feature: domain Description: GIIM Note: maturase Location: 1438-1669 bp Feature: domain Description: GIIM Note: maturase Location: 1 438-1 669 bp Feature: gene Location: 2128-2301 bp Feature: gene Location: 2683-3606 bp Feature: domain Description: YWFCY Location: 2689-2866 bp Feature: domain Description: YWFCY Location: 2689-2866 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YWFCY (pfam14293), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VULU01000018.1 Bacteroides vulgatus strain WCA-389-WT-3C seq18, whole genome shotgun sequence (84491 bp)
Overview 1 RT 1: 75515-80678 bp Neighborhood of RT #1 [75515, 80680] PRK07726 RVT-GII Intron_maturas2 HNHc PRK07726 DUF1896 Feature: gene Location: 75515-75877 bp Feature: domain Description: PRK07726 Location: 75518-75875 bp Feature: domain Description: PRK0772 6 Location: 75518-75875 bp Feature: gene Location: 76113-76331 bp Feature: gene Location: 76438-78240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76702-77524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 76702 -7752 4 bp Feature: domain Description: Intron_maturas2 Location: 77668-77923 bp Feature: domain Description: Intron_maturas2 Location: 77668-7792 3 bp Feature: domain Description: HNHc Note: nucleases Location: 78079-78220 bp Feature: domain Description: HNHc Note: nucleases Location: 78079-782 2 0 bp Feature: gene Location: 78218-80047 bp Feature: domain Description: PRK07726 Location: 78359-79877 bp Feature: domain Description: PRK0772 6 Location: 78359-79877 bp Feature: gene Location: 80237-80680 bp Feature: domain Description: DUF1896 Location: 80258-80678 bp Feature: domain Description: DUF1896 Location: 802 58-80678 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK07726 (DNA topoisomerase 3), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DUF1896 (pfam08989)

Seq: VULU01000021.1 Bacteroides vulgatus strain WCA-389-WT-3C seq21, whole genome shotgun sequence (75517 bp)
Overview 1 RT 1: 141-4982 bp 2 RT 2: 28475-33886 bp Neighborhood of RT #1 [141, 5083] COG4646 RVT_N RVT-GII GIIM Arm-DNA-bind_5 Neighborhood of RT #2 [28475, 33891] PLDc_Nuc_like_unchar2 TrwB_AAD_bind TraG-D_C RVT-GII Intron_maturas2 HNHc Bac_Flav_CT_N TraO Feature: gene Location: 141-1160 bp Feature: domain Description: COG4646 Location: 147-771 bp Feature: domain Description: COG4646 Location: 147-771 bp Feature: gene Location: 1817-3484 bp Feature: RT Description: RVT_N Location: 1871-2114 bp Feature: RT Description: RVT_N Location: 1871-2114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2159-2807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2159-2807 bp Feature: domain Description: GIIM Note: maturase Location: 2861-3092 bp Feature: domain Description: GIIM Note: maturase Location: 2861-3 092 bp Feature: gene Location: 3438-4658 bp Feature: gene Location: 4724-5083 bp Feature: domain Description: Arm-DNA-bind_5 Location: 4751-4982 bp Feature: domain Description: Arm-DNA-bind_5 Location: 4751-4982 bp Feature: gene Location: 28475-29284 bp Feature: domain Description: PLDc_Nuc_like_unchar2 Location: 28880-29270 bp Feature: domain Description: PLDc_Nuc_like_unchar2 Location: 28880-29270 bp Feature: gene Location: 29320-30984 bp Feature: domain Description: TrwB_AAD_bind Location: 29584-29692 bp Feature: domain Description: TrwB_AAD_bind Location: 29584-29692 bp Feature: domain Description: TraG-D_C Location: 30361-30691 bp Feature: domain Description: TraG-D_C Location: 3 03 61-3 0691 bp Feature: gene Location: 30971-32440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31001-31718 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 1001-3 1718 bp Feature: domain Description: Intron_maturas2 Location: 31877-32099 bp Feature: domain Description: Intron_maturas2 Location: 3 1877-3 2099 bp Feature: domain Description: HNHc Note: nucleases Location: 32273-32414 bp Feature: domain Description: HNHc Note: nucleases Location: 3 2273 -3 2414 bp Feature: gene Location: 32430-33311 bp Feature: domain Description: Bac_Flav_CT_N Location: 32553-33291 bp Feature: domain Description: Bac_Flav_CT_N Location: 3 2553 -3 3 291 bp Feature: gene Location: 33313-33891 bp Feature: domain Description: TraO Location: 33385-33886 bp Feature: domain Description: TraO Location: 3 3 3 85-3 3 886 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), Arm-DNA-bind_5 (pfam17293), PLDc_Nuc_like_unchar2 (cd09174), TrwB_AAD_bind (pfam10412), TraG-D_C (pfam12696), Intron_maturas2 (pfam01348), HNHc (smart00507)
Bac_Flav_CT_N (TIGR03780), TraO (pfam10626)

Seq: VULU01000022.1 Bacteroides vulgatus strain WCA-389-WT-3C seq22, whole genome shotgun sequence (74492 bp)
Overview 1 RT 1: 23113-25587 bp Neighborhood of RT #1 [23113, 25587] RVT_N RVT-GII GIIM Feature: gene Location: 23113-23259 bp Feature: gene Location: 23266-23496 bp Feature: gene Location: 23582-25084 bp Feature: RT Description: RVT_N Location: 23648-23891 bp Feature: RT Description: RVT_N Location: 2364 8-23891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23936-24578 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23936-24 578 bp Feature: domain Description: GIIM Note: maturase Location: 24635-24866 bp Feature: domain Description: GIIM Note: maturase Location: 24 635-24 866 bp Feature: gene Location: 24909-25271 bp Feature: gene Location: 25420-25587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VULU01000023.1 Bacteroides vulgatus strain WCA-389-WT-3C seq23, whole genome shotgun sequence (74298 bp)
Overview 1 RT 1: 3-2513 bp Neighborhood of RT #1 [3, 2513] RVT_N RVT-GII GIIM Feature: gene Location: 3-152 bp Feature: gene Location: 180-389 bp Feature: gene Location: 394-2046 bp Feature: RT Description: RVT_N Location: 448-691 bp Feature: RT Description: RVT_N Location: 448-691 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 736-1384 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 736-1384 bp Feature: domain Description: GIIM Note: maturase Location: 1438-1669 bp Feature: domain Description: GIIM Note: maturase Location: 1438-1669 bp Feature: gene Location: 2212-2346 bp Feature: gene Location: 2364-2513 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VULU01000097.1 Bacteroides vulgatus strain WCA-389-WT-3C seq97, whole genome shotgun sequence (5052 bp)
Overview 1 RT 1: 119-5050 bp Neighborhood of RT #1 [119, 5050] RVT-GII Intron_maturas2 HNHc RVT-GII Intron_maturas2 HNHc Feature: gene Location: 119-1936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386-1208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 386 -1208 bp Feature: domain Description: Intron_maturas2 Location: 1352-1586 bp Feature: domain Description: Intron_maturas2 Location: 1352-1586 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1907 bp Feature: domain Description: HNHc Note: nucleases Location: 1757-1907 bp Feature: gene Location: 2103-2387 bp Feature: gene Location: 2463-2768 bp Feature: gene Location: 2755-4560 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3019-3841 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3019-3841 bp Feature: domain Description: Intron_maturas2 Location: 3919-4249 bp Feature: domain Description: Intron_maturas2 Location: 3919-4249 bp Feature: domain Description: HNHc Note: nucleases Location: 4393-4537 bp Feature: domain Description: HNHc Note: nucleases Location: 4393-4537 bp Feature: gene Location: 4562-5050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)