myRT

myRT report for GCA_009707915.1_ASM970791v1

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Seq: WMDX01000016.1 Escherichia coli strain A241 SQ59_S11_L001_R1_A241_(paired)_contig_16, whole genome shotgun sequence (47278 bp)
Overview 1 RT 1: 21950-25833 bp Neighborhood of RT #1 [21950, 25838] rph pyrE RVT-Retrons slmA dut Feature: gene Location: 21950-22666 bp Feature: domain Description: rph Location: 21953-22661 bp Feature: domain Description: rph Location: 21 953-22661 bp Feature: gene Location: 22718-23374 bp Feature: domain Description: pyrE Location: 22736-23369 bp Feature: domain Description: pyrE Location: 22736-23369 bp Feature: gene Location: 23672-24631 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23807-24356 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 23807-24356 bp Feature: gene Location: 24677-25273 bp Feature: domain Description: slmA Location: 24683-25259 bp Feature: domain Description: slmA Location: 24683-25259 bp Feature: gene Location: 25380-25838 bp Feature: domain Description: dut Location: 25386-25833 bp Feature: domain Description: dut Location: 25386-25833 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT rph (PRK00173), pyrE (TIGR00336), RVT-Retrons, slmA (PRK09480), dut (TIGR00576)

Seq: WMDX01000037.1 Escherichia coli strain A241 SQ59_S11_L001_R1_A241_(paired)_contig_38, whole genome shotgun sequence (77656 bp)
Overview 1 RT 1: 6386-11998 bp Neighborhood of RT #1 [6386, 12000] Phage_fiber Phage_fiber Phage_fiber Phage_fiber Caudo_TAP RVT-Retrons TIR_2 PRK10597 prfC Feature: gene Location: 6386-6943 bp Feature: domain Description: Phage_fiber Location: 6452-6488 bp Feature: domain Description: Phage_fiber Location: 6452 -6488 bp Feature: domain Description: Phage_fiber Location: 6548-6587 bp Feature: domain Description: Phage_fiber Location: 6548-6587 bp Feature: domain Description: Phage_fiber Location: 6746-6785 bp Feature: domain Description: Phage_fiber Location: 6746-6785 bp Feature: domain Description: Phage_fiber Location: 6791-6821 bp Feature: domain Description: Phage_fiber Location: 6791-682 1 bp Feature: gene Location: 6955-7527 bp Feature: domain Description: Caudo_TAP Location: 7159-7516 bp Feature: domain Description: Caudo_TAP Location: 7159-7516 bp Feature: gene Location: 7972-9576 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 8263-8854 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 82 63-8854 bp Feature: domain Description: TIR_2 Location: 9181-9514 bp Feature: domain Description: TIR_2 Location: 9181-9514 bp Feature: gene Location: 9934-10194 bp Feature: domain Description: PRK10597 Location: 9937-10177 bp Feature: domain Description: PRK10597 Location: 9937-10177 bp Feature: gene Location: 10414-12000 bp Feature: domain Description: prfC Location: 10432-11998 bp Feature: domain Description: prfC Location: 10432 -11998 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_fiber (pfam03335), Caudo_TAP (pfam02413), RVT-Retrons, TIR_2 (pfam13676), PRK10597 (DNA damage-inducible protein I; Provisional), prfC (TIGR00503)

Seq: WMDX01000063.1 Escherichia coli strain A241 SQ59_S11_L001_R1_A241_(paired)_contig_64, whole genome shotgun sequence (29557 bp)
Overview 1 RT 1: 16617-21049 bp Neighborhood of RT #1 [16617, 21171] SLATT_5 RVT-UG17 Caudo_TAP Collar Phage_fiber Phage_fiber Phage_fiber Phage_fiber Feature: gene Location: 16617-16757 bp Feature: gene Location: 16770-17321 bp Feature: domain Description: SLATT_5 Location: 16776-17292 bp Feature: domain Description: SLATT_5 Location: 16776-17292 bp Feature: gene Location: 17299-18669 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 17527-18133 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 17527-1813 3 bp Feature: gene Location: 18782-19366 bp Feature: domain Description: Caudo_TAP Location: 18998-19355 bp Feature: domain Description: Caudo_TAP Location: 18998-193 55 bp Feature: gene Location: 19366-21171 bp Feature: domain Description: Collar Location: 20491-20629 bp Feature: domain Description: Collar Location: 20491-20629 bp Feature: domain Description: Phage_fiber Location: 20680-20719 bp Feature: domain Description: Phage_fiber Location: 20680-20719 bp Feature: domain Description: Phage_fiber Location: 20776-20815 bp Feature: domain Description: Phage_fiber Location: 20776-20815 bp Feature: domain Description: Phage_fiber Location: 20974-21013 bp Feature: domain Description: Phage_fiber Location: 20974-21013 bp Feature: domain Description: Phage_fiber Location: 21019-21049 bp Feature: domain Description: Phage_fiber Location: 21019-21049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Collar (pfam07484), Phage_fiber (pfam03335)

Seq: WMDX01000082.1 Escherichia coli strain A241 SQ59_S11_L001_R1_A241_(paired)_contig_86, whole genome shotgun sequence (7017 bp)
Overview 1 RT 1: 51-2758 bp Neighborhood of RT #1 [51, 2775] RVT-GII PRK10276 Feature: gene Location: 51-266 bp Feature: gene Location: 451-1461 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 457-1069 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 57-1069 bp Feature: gene Location: 1573-1938 bp Feature: gene Location: 2092-2775 bp Feature: domain Description: PRK10276 Location: 2395-2758 bp Feature: domain Description: PRK10276 Location: 2395-2758 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit)