myRT

myRT report for GCA_009708105.1_ASM970810v1

Download annotations/find similar RTs

Seq: WMDU01000002.1 Escherichia coli strain A127 A_127_000000000-B8CVN_L001_R1_(paired)_contig_10, whole genome shotgun sequence (415799 bp)
Overview 1 RT 1: 54907-58680 bp Neighborhood of RT #1 [54907, 58745] PRK09183 PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 54907-55686 bp Feature: domain Description: PRK09183 Location: 54913-55684 bp Feature: domain Description: PRK091 83 Location: 5491 3-55684 bp Feature: gene Location: 55696-56103 bp Feature: domain Description: PHA02517 Location: 55699-56089 bp Feature: domain Description: PHA0251 7 Location: 55699-56089 bp Feature: gene Location: 56220-57743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56493-57225 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56493-57225 bp Feature: domain Description: GIIM Note: maturase Location: 57300-57498 bp Feature: domain Description: GIIM Note: maturase Location: 57300-57498 bp Feature: gene Location: 57697-58122 bp Feature: gene Location: 58335-58745 bp Feature: domain Description: PHA02517 Location: 58341-58680 bp Feature: domain Description: PHA0251 7 Location: 58341 -58680 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09183 (transposase/IS protein; Provisional), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: WMDU01000021.1 Escherichia coli strain A127 A_127_000000000-B8CVN_L001_R1_(paired)_contig_30, whole genome shotgun sequence (55071 bp)
Overview 1 RT 1: 2-6537 bp Neighborhood of RT #1 [2, 7427] Q RVT-Retrons RVT-AbiP2 Phage_GPA Feature: gene Location: 2-631 bp Feature: domain Description: Q Location: 5-626 bp Feature: domain Description: Q Location: 5-62 6 bp Feature: gene Location: 674-1381 bp Feature: gene Location: 1378-2568 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1528-2110 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 152 8-2 110 bp Feature: gene Location: 3119-4663 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3536-3989 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 3536-3989 bp Feature: gene Location: 4829-5089 bp Feature: gene Location: 5151-7427 bp Feature: domain Description: Phage_GPA Location: 5550-6537 bp Feature: domain Description: Phage_GPA Location: 5550-6537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Q (PHA02536), RVT-Retrons, RVT-AbiP2, Phage_GPA (pfam05840)