myRT

myRT report for GCA_009709555.1_ASM970955v1

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Seq: WJBG01000099.1 Streptomyces sp. TRM63209 1219, whole genome shotgun sequence (6954 bp)
Overview 1 RT 1: 74-3647 bp Neighborhood of RT #1 [74, 3700] RVT-GII GIIM Udk SigE-fam_strep Feature: gene Location: 74-1327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257-872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257-872 bp Feature: domain Description: GIIM Note: maturase Location: 932-1157 bp Feature: domain Description: GIIM Note: maturase Location: 932-1 1 57 bp Feature: gene Location: 2092-2718 bp Feature: domain Description: Udk Location: 2104-2533 bp Feature: domain Description: Udk Location: 21 04-2533 bp Feature: gene Location: 2957-3700 bp Feature: domain Description: SigE-fam_strep Location: 3182-3647 bp Feature: domain Description: SigE-fam_strep Location: 31 82-3647 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Udk (COG0572), SigE-fam_strep (TIGR02983), RVT-GII, GIIM (pfam08388)

Seq: WJBG01000100.1 Streptomyces sp. TRM63209 1220, whole genome shotgun sequence (64759 bp)
Overview 1 RT 1: 74-4825 bp Neighborhood of RT #1 [74, 4881] RVT-GII GIIM BaxI_1 Cfa Feature: gene Location: 74-1327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257-872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 57-872 bp Feature: domain Description: GIIM Note: maturase Location: 932-1157 bp Feature: domain Description: GIIM Note: maturase Location: 932 -1157 bp Feature: gene Location: 2006-2917 bp Feature: domain Description: BaxI_1 Location: 2078-2906 bp Feature: domain Description: BaxI_1 Location: 2 078-2 906 bp Feature: gene Location: 3553-4881 bp Feature: domain Description: Cfa Location: 3973-4825 bp Feature: domain Description: Cfa Location: 3973-482 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BaxI_1 (pfam12811), Cfa (COG2230), RVT-GII, GIIM (pfam08388)

Seq: WJBG01000101.1 Streptomyces sp. TRM63209 1222, whole genome shotgun sequence (19176 bp)
Overview 1 RT 1: 604-5052 bp Neighborhood of RT #1 [604, 5126] RVT-GII GIIM PBP1_BmpA_PnrA_like YufO Feature: gene Location: 604-1857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787-1402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787-1402 bp Feature: domain Description: GIIM Note: maturase Location: 1462-1687 bp Feature: domain Description: GIIM Note: maturase Location: 1462-1687 bp Feature: gene Location: 2312-3358 bp Feature: domain Description: PBP1_BmpA_PnrA_like Location: 2438-3254 bp Feature: domain Description: PBP1_BmpA_PnrA_like Location: 243 8-3 254 bp Feature: gene Location: 3510-5126 bp Feature: domain Description: YufO Location: 3573-5052 bp Feature: domain Description: YufO Location: 3 573 -5052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PBP1_BmpA_PnrA_like, YufO (COG3845), RVT-GII, GIIM (pfam08388)

Seq: WJBG01000102.1 Streptomyces sp. TRM63209 1223, whole genome shotgun sequence (4802 bp)
Overview 1 RT 1: 439-2765 bp Neighborhood of RT #1 [439, 3400] RVT-GII GIIM Phd HTH_31 Feature: gene Location: 439-1857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787-1402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787-14 02 bp Feature: domain Description: GIIM Note: maturase Location: 1462-1687 bp Feature: domain Description: GIIM Note: maturase Location: 14 62-1687 bp Feature: gene Location: 1938-2183 bp Feature: domain Description: Phd Location: 1941-2169 bp Feature: domain Description: Phd Location: 194 1-2169 bp Feature: gene Location: 2552-3400 bp Feature: domain Description: HTH_31 Location: 2609-2765 bp Feature: domain Description: HTH_31 Location: 2609-2765 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phd (COG4118), HTH_31 (pfam13560), RVT-GII, GIIM (pfam08388)

Seq: WJBG01000103.1 Streptomyces sp. TRM63209 1224, whole genome shotgun sequence (67489 bp)
Overview 1 RT 1: 604-4263 bp Neighborhood of RT #1 [604, 4268] RVT-GII GIIM YeaD2 MoxR Feature: gene Location: 604-1857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787-1402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787-1402 bp Feature: domain Description: GIIM Note: maturase Location: 1462-1687 bp Feature: domain Description: GIIM Note: maturase Location: 1462-1687 bp Feature: gene Location: 1966-3186 bp Feature: domain Description: YeaD2 Location: 1978-3169 bp Feature: domain Description: YeaD2 Location: 1978-3169 bp Feature: gene Location: 3276-4268 bp Feature: domain Description: MoxR Location: 3321-4263 bp Feature: domain Description: MoxR Location: 3321-4263 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeaD2 (COG1721), MoxR (COG0714), RVT-GII, GIIM (pfam08388)

Seq: WJBG01000104.1 Streptomyces sp. TRM63209 1225, whole genome shotgun sequence (21691 bp)
Overview 1 RT 1: 604-5293 bp Neighborhood of RT #1 [604, 5293] RVT-GII GIIM ACT_PSP_1 serB Feature: gene Location: 604-1857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787-1402 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 787-1402 bp Feature: domain Description: GIIM Note: maturase Location: 1462-1687 bp Feature: domain Description: GIIM Note: maturase Location: 146 2-16 87 bp Feature: gene Location: 1964-3172 bp Feature: domain Description: ACT_PSP_1 Location: 2003-2219 bp Feature: domain Description: ACT_PSP_1 Location: 2003-2219 bp Feature: domain Description: serB Location: 2432-3125 bp Feature: domain Description: serB Location: 2432-3125 bp Feature: gene Location: 3365-5293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ACT_PSP_1 (cd04870), serB (TIGR00338), RVT-GII, GIIM (pfam08388)

Seq: WJBG01000107.1 Streptomyces sp. TRM63209 1228, whole genome shotgun sequence (62605 bp)
Overview 1 RT 1: 57966-62362 bp Neighborhood of RT #1 [57966, 62532] M20_Acy1-like PBP1_BmpA_PnrA_like RVT-GII GIIM Feature: gene Location: 57966-59189 bp Feature: domain Description: M20_Acy1-like Location: 58047-59166 bp Feature: domain Description: M20_Acy1-like Location: 58047 -59166 bp Feature: gene Location: 59522-60574 bp Feature: domain Description: PBP1_BmpA_PnrA_like Location: 59657-60470 bp Feature: domain Description: PBP1_BmpA_PnrA_like Location: 59657 -6047 0 bp Feature: gene Location: 61279-62532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61462-62077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61462-6207 7 bp Feature: domain Description: GIIM Note: maturase Location: 62137-62362 bp Feature: domain Description: GIIM Note: maturase Location: 62137 -62362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT M20_Acy1-like (cd08660), PBP1_BmpA_PnrA_like, RVT-GII, GIIM (pfam08388)

Seq: WJBG01000110.1 Streptomyces sp. TRM63209 1231, whole genome shotgun sequence (3928 bp)
Overview 1 RT 1: 186-3685 bp Neighborhood of RT #1 [186, 3855] TPR_19 TPR_19 RVT-GII GIIM Feature: gene Location: 186-1952 bp Feature: domain Description: TPR_19 Location: 1440-1572 bp Feature: domain Description: TPR_19 Location: 1440-1572 bp Feature: domain Description: TPR_19 Location: 1656-1830 bp Feature: domain Description: TPR_19 Location: 1656-18 30 bp Feature: gene Location: 2602-3855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2785-3400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 278 5-3400 bp Feature: domain Description: GIIM Note: maturase Location: 3460-3685 bp Feature: domain Description: GIIM Note: maturase Location: 3460-368 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TPR_19 (pfam14559), RVT-GII, GIIM (pfam08388)

Seq: WJBG01000115.1 Streptomyces sp. TRM63209 1236, whole genome shotgun sequence (35548 bp)
Overview 1 RT 1: 32398-34775 bp Neighborhood of RT #1 [32398, 34945] ruvA ruvC RVT-GII GIIM Feature: gene Location: 32398-33003 bp Feature: domain Description: ruvA Location: 32401-32989 bp Feature: domain Description: ruvA Location: 32401-329 89 bp Feature: gene Location: 33000-33545 bp Feature: domain Description: ruvC Location: 33003-33480 bp Feature: domain Description: ruvC Location: 33003-33480 bp Feature: gene Location: 33692-34945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33875-34490 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33875-3449 0 bp Feature: domain Description: GIIM Note: maturase Location: 34550-34775 bp Feature: domain Description: GIIM Note: maturase Location: 34550-34775 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ruvA (TIGR00084), ruvC (TIGR00228), RVT-GII, GIIM (pfam08388)

Seq: WJBG01000120.1 Streptomyces sp. TRM63209 1241, whole genome shotgun sequence (166522 bp)
Overview 1 RT 1: 162199-165749 bp Neighborhood of RT #1 [162199, 165919] HAD_Pase_UmpH-like GNAT_like DUF1015 RVT-GII GIIM Feature: gene Location: 162199-163227 bp Feature: domain Description: HAD_Pase_UmpH-like Location: 162265-163012 bp Feature: domain Description: HAD_Pase_UmpH-like Location: 162265-163012 bp Feature: domain Description: GNAT_like Location: 163066-163225 bp Feature: domain Description: GNAT_like Location: 163066-163225 bp Feature: gene Location: 163301-164593 bp Feature: domain Description: DUF1015 Location: 163352-164579 bp Feature: domain Description: DUF10 15 Location: 163352-164579 bp Feature: gene Location: 164666-165919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164849-165464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164849-165464 bp Feature: domain Description: GIIM Note: maturase Location: 165524-165749 bp Feature: domain Description: GIIM Note: maturase Location: 165524-165749 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HAD_Pase_UmpH-like (cd16422), GNAT_like (pfam18407), DUF1015 (pfam06245), RVT-GII, GIIM (pfam08388)

Seq: WJBG01000136.1 Streptomyces sp. TRM63209 1257, whole genome shotgun sequence (3396 bp)
Overview 1 RT 1: 618-3386 bp Neighborhood of RT #1 [618, 3394] RVT-GII GIIM DDE_5 DUF2182 Feature: gene Location: 618-2066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1626 bp Feature: domain Description: GIIM Note: maturase Location: 1698-1926 bp Feature: domain Description: GIIM Note: maturase Location: 1698-1926 bp Feature: gene Location: 2217-2735 bp Feature: domain Description: DDE_5 Location: 2220-2667 bp Feature: domain Description: DDE_5 Location: 2220-2667 bp Feature: gene Location: 2780-3394 bp Feature: domain Description: DUF2182 Location: 3194-3386 bp Feature: domain Description: DUF2182 Location: 3194-3386 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), DUF2182 (pfam09948), RVT-GII, GIIM (pfam08388)

Seq: WJBG01000137.1 Streptomyces sp. TRM63209 1258, whole genome shotgun sequence (3379 bp)
Overview 1 RT 1: 618-3129 bp Neighborhood of RT #1 [618, 3263] RVT-GII GIIM COG5659 Feature: gene Location: 618-2066 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1626 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 939-1626 bp Feature: domain Description: GIIM Note: maturase Location: 1698-1926 bp Feature: domain Description: GIIM Note: maturase Location: 1698-1926 bp Feature: gene Location: 2073-3263 bp Feature: domain Description: COG5659 Location: 2208-3129 bp Feature: domain Description: COG5659 Location: 2208-312 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG5659 (SRSO17 transposase ), RVT-GII, GIIM (pfam08388)

Seq: WJBG01000138.1 Streptomyces sp. TRM63209 1259, whole genome shotgun sequence (49711 bp)
Overview 1 RT 1: 114-3094 bp Neighborhood of RT #1 [114, 3192] RVT-GII GIIM rnhB Feature: gene Location: 114-1562 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435-1122 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435-1122 bp Feature: domain Description: GIIM Note: maturase Location: 1194-1422 bp Feature: domain Description: GIIM Note: maturase Location: 1194-1422 bp Feature: gene Location: 2100-2291 bp Feature: gene Location: 2491-3192 bp Feature: domain Description: rnhB Location: 2515-3094 bp Feature: domain Description: rnhB Location: 2515-3094 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), rnhB (PRK14551)

Seq: WJBG01000206.1 Streptomyces sp. TRM63209 1334, whole genome shotgun sequence (7859 bp)
Overview 1 RT 1: 5276-7086 bp Neighborhood of RT #1 [5276, 7256] DUF4287 RVT-GII GIIM Feature: gene Location: 5276-5557 bp Feature: gene Location: 5672-5920 bp Feature: domain Description: DUF4287 Location: 5717-5891 bp Feature: domain Description: DUF4287 Location: 5717-5891 bp Feature: gene Location: 6003-7256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6186-6801 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6186-6801 bp Feature: domain Description: GIIM Note: maturase Location: 6861-7086 bp Feature: domain Description: GIIM Note: maturase Location: 6861-7086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4287 (pfam14117), RVT-GII, GIIM (pfam08388)

Seq: WJBG01000248.1 Streptomyces sp. TRM63209 1380, whole genome shotgun sequence (89619 bp)
Overview 1 RT 1: 74-3399 bp Neighborhood of RT #1 [74, 3425] RVT-GII GIIM PRK00110 PRK13525 Feature: gene Location: 74-1327 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257-872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257-872 bp Feature: domain Description: GIIM Note: maturase Location: 932-1157 bp Feature: domain Description: GIIM Note: maturase Location: 932-115 7 bp Feature: gene Location: 1991-2743 bp Feature: domain Description: PRK00110 Location: 1994-2732 bp Feature: domain Description: PRK00110 Location: 1994-2732 bp Feature: gene Location: 2820-3425 bp Feature: domain Description: PRK13525 Location: 2832-3399 bp Feature: domain Description: PRK13525 Location: 2832-3399 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00110 (YebC/PmpR family DNA-binding transcriptional regulator), PRK13525 (pyridoxal 5'-phosphate synthase glutaminase subunit PdxT), RVT-GII, GIIM (pfam08388)