myRT

myRT report for GCA_009709745.1_ASM970974v1

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Seq: WCEW01000006.1 Escherichia coli strain SE161 contig00006, whole genome shotgun sequence (206593 bp)
Overview 1 RT 1: 24117-28408 bp Neighborhood of RT #1 [24117, 28408] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 24117-25379 bp Feature: domain Description: YesM Location: 24630-25371 bp Feature: domain Description: YesM Location: 24630-25371 bp Feature: gene Location: 25409-25579 bp Feature: gene Location: 25929-26450 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25935-26217 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25935-2621 7 bp Feature: domain Description: GIIM Note: maturase Location: 26265-26445 bp Feature: domain Description: GIIM Note: maturase Location: 26265-26445 bp Feature: gene Location: 26478-27017 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26808-26886 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26808-26886 bp Feature: gene Location: 27048-27245 bp Feature: gene Location: 27503-28408 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)

Seq: WCEW01000010.1 Escherichia coli strain SE161 contig00010, whole genome shotgun sequence (166176 bp)
Overview 1 RT 1: 22242-28485 bp Neighborhood of RT #1 [22242, 28622] Phage_integrase RVT-UG5 nitrilase AbiEi_3_N AbiEi_3 AbiEii Feature: gene Location: 22242-22508 bp Feature: domain Description: Phage_integrase Location: 22308-22404 bp Feature: domain Description: Phage_integrase Location: 2 2 308-2 2 404 bp Feature: gene Location: 22591-23061 bp Feature: gene Location: 23408-26617 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 23936-24425 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2 3936-2 442 5 bp Feature: domain Description: nitrilase Location: 25931-26528 bp Feature: domain Description: nitrilase Location: 2 5931-2 652 8 bp Feature: gene Location: 26912-27715 bp Feature: domain Description: AbiEi_3_N Location: 26945-27206 bp Feature: domain Description: AbiEi_3_N Location: 2 6945-2 72 06 bp Feature: domain Description: AbiEi_3 Location: 27218-27674 bp Feature: domain Description: AbiEi_3 Location: 2 72 18-2 7674 bp Feature: gene Location: 27702-28622 bp Feature: domain Description: AbiEii Location: 27744-28485 bp Feature: domain Description: AbiEii Location: 2 7744-2 8485 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_integrase (pfam00589), RVT-UG5, nitrilase (cl11424), AbiEi_3_N (pfam17194), AbiEi_3 (pfam11459), AbiEii (pfam08843)

Seq: WCEW01000066.1 Escherichia coli strain SE161 contig00066, whole genome shotgun sequence (11728 bp)
Overview 1 RT 1: 8450-11727 bp Neighborhood of RT #1 [8450, 11727] COG2085 PHA02517 RVT-GII GIIM Feature: gene Location: 8450-8863 bp Feature: domain Description: COG2085 Location: 8549-8696 bp Feature: domain Description: COG2085 Location: 8549-8696 bp Feature: gene Location: 9029-9205 bp Feature: domain Description: PHA02517 Location: 9032-9134 bp Feature: domain Description: PHA02517 Location: 903 2-913 4 bp Feature: gene Location: 9358-10881 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9631-10363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963 1-103 63 bp Feature: domain Description: GIIM Note: maturase Location: 10438-10636 bp Feature: domain Description: GIIM Note: maturase Location: 1043 8-1063 6 bp Feature: gene Location: 11512-11727 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG2085 (Predicted dinucleotide-binding enzyme ), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)