myRT

myRT report for GCA_009710005.1_ASM971000v1

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Seq: WMIM01000010.1 Klebsiella pneumoniae strain RADAR41 NODE_10_length_230755_cov_31.063262, whole genome shotgun sequence (230755 bp)
Overview 1 RT 1: 99792-106636 bp Neighborhood of RT #1 [99792, 106893] AAA_15 RVT-Retrons Nuc_deoxyrib_tr HTH_23 Feature: gene Location: 99792-100097 bp Feature: gene Location: 100980-103256 bp Feature: domain Description: AAA_15 Location: 101013-102021 bp Feature: domain Description: AAA_1 5 Location: 1 01 01 3-1 02021 bp Feature: gene Location: 103371-104471 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 103554-104082 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 03554-1 04082 bp Feature: gene Location: 105127-105996 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 105649-105820 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 05649-1 05820 bp Feature: gene Location: 106417-106893 bp Feature: domain Description: HTH_23 Location: 106495-106636 bp Feature: domain Description: HTH_23 Location: 1 06495-1 06636 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_15 (pfam13175), RVT-Retrons, Nuc_deoxyrib_tr (pfam05014), HTH_23 (pfam13384)

Seq: WMIM01000033.1 Klebsiella pneumoniae strain RADAR41 NODE_33_length_20183_cov_30.610191, whole genome shotgun sequence (20183 bp)
Overview 1 RT 1: 9261-14286 bp Neighborhood of RT #1 [9261, 14291] umuC PRK10276 RVT-GII ArdC Feature: gene Location: 9261-10532 bp Feature: domain Description: umuC Location: 9264-10524 bp Feature: domain Description: umuC Location: 92 64-1052 4 bp Feature: gene Location: 10532-11215 bp Feature: domain Description: PRK10276 Location: 10835-11198 bp Feature: domain Description: PRK102 76 Location: 10835-11198 bp Feature: gene Location: 11369-12856 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11774-12464 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11774-12 464 bp Feature: gene Location: 12925-13194 bp Feature: gene Location: 13326-14291 bp Feature: domain Description: ArdC Location: 13452-14286 bp Feature: domain Description: ArdC Location: 13452 -142 86 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, ArdC (COG4227), umuC (PRK03609)

Seq: WMIM01000039.1 Klebsiella pneumoniae strain RADAR41 NODE_39_length_10636_cov_34.182225, whole genome shotgun sequence (10636 bp)
Overview 1 RT 1: 777-4870 bp Neighborhood of RT #1 [777, 4935] COG3547 RVT-GII GIIM PHA02517 Feature: gene Location: 777-1853 bp Feature: domain Description: COG3547 Location: 816-1737 bp Feature: domain Description: COG3 547 Location: 816-173 7 bp Feature: gene Location: 2102-2308 bp Feature: gene Location: 2395-3918 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2668-3400 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2668-3 400 bp Feature: domain Description: GIIM Note: maturase Location: 3475-3673 bp Feature: domain Description: GIIM Note: maturase Location: 3 475-3 673 bp Feature: gene Location: 3872-4297 bp Feature: gene Location: 4510-4935 bp Feature: domain Description: PHA02517 Location: 4534-4870 bp Feature: domain Description: PHA02517 Location: 453 4-4870 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), COG3547 (Transposase )