myRT

myRT report for GCA_009710105.1_ASM971010v1

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Seq: WMIR01000010.1 Klebsiella pneumoniae strain RADAR43 NODE_10_length_230755_cov_25.502476, whole genome shotgun sequence (230755 bp)
Overview 1 RT 1: 123863-130964 bp Neighborhood of RT #1 [123863, 130964] HTH_23 Nuc_deoxyrib_tr RVT-Retrons AAA_15 Feature: gene Location: 123863-124339 bp Feature: domain Description: HTH_23 Location: 123941-124082 bp Feature: domain Description: HTH_23 Location: 1 23941 -1 24082 bp Feature: gene Location: 124760-125629 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 125282-125453 bp Feature: domain Description: Nuc_deoxyrib_tr Location: 1 25282-1 25453 bp Feature: gene Location: 126285-127385 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 126468-126996 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 26468-1 26996 bp Feature: gene Location: 127500-129776 bp Feature: domain Description: AAA_15 Location: 127533-128541 bp Feature: domain Description: AAA_1 5 Location: 1 27533-1 28541 bp Feature: gene Location: 130659-130964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), Nuc_deoxyrib_tr (pfam05014), RVT-Retrons, AAA_15 (pfam13175)

Seq: WMIR01000034.1 Klebsiella pneumoniae strain RADAR43 NODE_34_length_20183_cov_112.565816, whole genome shotgun sequence (20183 bp)
Overview 1 RT 1: 5893-10915 bp Neighborhood of RT #1 [5893, 10923] ArdC RVT-GII PRK10276 umuC Feature: gene Location: 5893-6858 bp Feature: domain Description: ArdC Location: 6019-6853 bp Feature: domain Description: ArdC Location: 6019-6853 bp Feature: gene Location: 6990-7259 bp Feature: gene Location: 7328-8815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7733-8423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7733-842 3 bp Feature: gene Location: 8969-9652 bp Feature: domain Description: PRK10276 Location: 9272-9635 bp Feature: domain Description: PRK102 76 Location: 92 72 -9635 bp Feature: gene Location: 9652-10923 bp Feature: domain Description: umuC Location: 9655-10915 bp Feature: domain Description: umuC Location: 9655-10915 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ArdC (COG4227), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: WMIR01000042.1 Klebsiella pneumoniae strain RADAR43 NODE_42_length_10636_cov_118.229898, whole genome shotgun sequence (10636 bp)
Overview 1 RT 1: 5373-9744 bp Neighborhood of RT #1 [5373, 9860] InsE PHA02517 RVT-GII GIIM PHA02517 COG3547 Feature: gene Location: 5373-5675 bp Feature: domain Description: InsE Location: 5382-5664 bp Feature: domain Description: InsE Location: 53 82-5664 bp Feature: gene Location: 5702-6127 bp Feature: domain Description: PHA02517 Location: 5726-6062 bp Feature: domain Description: PHA02517 Location: 5726-6062 bp Feature: gene Location: 6719-8242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6992-7724 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6992-7724 bp Feature: domain Description: GIIM Note: maturase Location: 7799-7997 bp Feature: domain Description: GIIM Note: maturase Location: 7799-7997 bp Feature: gene Location: 8407-8565 bp Feature: domain Description: PHA02517 Location: 8410-8530 bp Feature: domain Description: PHA02517 Location: 8410-853 0 bp Feature: gene Location: 8784-9860 bp Feature: domain Description: COG3547 Location: 8823-9744 bp Feature: domain Description: COG3 547 Location: 8823 -9744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), COG3547 (Transposase )