myRT

myRT report for GCA_009710415.1_ASM971041v1

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Seq: WMJE01000004.1 Klebsiella pneumoniae strain RADAR28 contig00004, whole genome shotgun sequence (355621 bp)
Overview 1 RT 1: 314169-319681 bp Neighborhood of RT #1 [314169, 319681] HTH_XRE RVT-Retrons Feature: gene Location: 314169-314495 bp Feature: gene Location: 314547-314837 bp Feature: domain Description: HTH_XRE Location: 314559-314724 bp Feature: domain Description: HTH_XRE Location: 31 4559-31 4724 bp Feature: gene Location: 314872-315789 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 314968-315535 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 31 4968-31 5535 bp Feature: gene Location: 316079-319681 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: WMJE01000018.1 Klebsiella pneumoniae strain RADAR28 contig00018, whole genome shotgun sequence (121013 bp)
Overview 1 RT 1: 29854-36707 bp Neighborhood of RT #1 [29854, 36724] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 29854-30519 bp Feature: domain Description: INT_P4_C Location: 29959-30517 bp Feature: domain Description: INT_P4_C Location: 2 9959-30517 bp Feature: gene Location: 30780-31220 bp Feature: domain Description: Integrase_1 Location: 30786-31002 bp Feature: domain Description: Integrase_1 Location: 30786-31002 bp Feature: gene Location: 31277-33355 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 31685-32129 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 31685-32 12 9 bp Feature: gene Location: 33355-35964 bp Feature: domain Description: FimD Location: 33412-35953 bp Feature: domain Description: FimD Location: 33412 -35953 bp Feature: gene Location: 35996-36724 bp Feature: domain Description: FimC Location: 36029-36707 bp Feature: domain Description: FimC Location: 3602 9-36707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: WMJE01000036.1 Klebsiella pneumoniae strain RADAR28 contig00036, whole genome shotgun sequence (18007 bp)
Overview 1 RT 1: 4048-7331 bp Neighborhood of RT #1 [4048, 7331] PRK10276 RVT-GII Feature: gene Location: 4048-4473 bp Feature: domain Description: PRK10276 Location: 4051-4459 bp Feature: domain Description: PRK10276 Location: 4051-4459 bp Feature: gene Location: 4703-4870 bp Feature: gene Location: 4876-6363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5281-5971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5281-5971 bp Feature: gene Location: 6597-6827 bp Feature: gene Location: 7161-7331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII