myRT

myRT report for GCA_009711785.1_ASM971178v1

Download annotations/find similar RTs

Seq: VENA01000016.1 Firmicutes bacterium isolate MES13 c_000000000042, whole genome shotgun sequence (284929 bp)
Overview 1 RT 1: 31824-36926 bp Neighborhood of RT #1 [31824, 36976] GIIM GIIM RVT-GII UbiG Glyco_tranf_GTA_type Beta4Glucosyltransferase TPR TPR Feature: gene Location: 31824-31988 bp Feature: domain Description: GIIM Note: maturase Location: 31827-31926 bp Feature: domain Description: GIIM Note: maturase Location: 31 827-31 926 bp Feature: gene Location: 32350-32637 bp Feature: domain Description: GIIM Note: maturase Location: 32356-32551 bp Feature: domain Description: GIIM Note: maturase Location: 32356-32551 bp Feature: gene Location: 32646-32957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32661-32871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 32661 -32871 bp Feature: gene Location: 33082-35001 bp Feature: domain Description: UbiG Location: 33373-33763 bp Feature: domain Description: UbiG Location: 33373-33763 bp Feature: domain Description: Glyco_tranf_GTA_type Location: 34009-34567 bp Feature: domain Description: Glyco_tranf_GTA_type Location: 34009-34567 bp Feature: gene Location: 35018-36976 bp Feature: domain Description: Beta4Glucosyltransferase Location: 35042-35879 bp Feature: domain Description: Beta4Glucosyltransferase Location: 35042-35879 bp Feature: domain Description: TPR Location: 35996-36158 bp Feature: domain Description: TPR Location: 35996-361 58 bp Feature: domain Description: TPR Location: 36662-36926 bp Feature: domain Description: TPR Location: 36662-36926 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GIIM (pfam08388), RVT-GII, UbiG (TIGR01983), Glyco_tranf_GTA_type (cl11394), Beta4Glucosyltransferase (cd02511), TPR (smart00028)

Seq: VENA01000064.1 Firmicutes bacterium isolate MES13 c_000000000140, whole genome shotgun sequence (140740 bp)
Overview 1 RT 1: 41347-50783 bp 2 RT 2: 93876-98766 bp Neighborhood of RT #1 [41347, 50863] TauB AE_Prim_S_like RVT-UG10 HTH_XRE PDDEXK_1 Neighborhood of RT #2 [93876, 98766] McrB RVT-Retrons Feature: gene Location: 41347-41514 bp Feature: gene Location: 42260-42874 bp Feature: domain Description: TauB Location: 42275-42866 bp Feature: domain Description: TauB Location: 42 2 75-42 866 bp Feature: gene Location: 43601-49195 bp Feature: domain Description: AE_Prim_S_like Location: 43769-44162 bp Feature: domain Description: AE_Prim_S_like Location: 43769-44162 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 44951-45605 bp Feature: RT Description: RVT-UG10 Note: UG10 RT Location: 44951-45605 bp Feature: gene Location: 49500-49961 bp Feature: domain Description: HTH_XRE Location: 49527-49698 bp Feature: domain Description: HTH_XRE Location: 4952 7-49698 bp Feature: gene Location: 50006-50863 bp Feature: domain Description: PDDEXK_1 Location: 50087-50783 bp Feature: domain Description: PDDEXK_1 Location: 50087-50783 bp Feature: gene Location: 93876-95462 bp Feature: domain Description: McrB Location: 94497-95220 bp Feature: domain Description: McrB Location: 94497-952 2 0 bp Feature: gene Location: 95544-95822 bp Feature: gene Location: 96318-97325 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96531-97083 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 96531-97083 bp Feature: gene Location: 97547-97867 bp Feature: gene Location: 97864-98766 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TauB (COG4525), AE_Prim_S_like (cl01287), RVT-UG10, HTH_XRE (smart00530), PDDEXK_1 (pfam12705), McrB (COG4054), RVT-Retrons

Seq: VENA01000038.1 Firmicutes bacterium isolate MES13 c_000000000144, whole genome shotgun sequence (134417 bp)
Overview 1 RT 1: 51460-57355 bp Neighborhood of RT #1 [51460, 57402] UlaG RVT-GII GIIM NapF YcaC_related Feature: gene Location: 51460-52194 bp Feature: domain Description: UlaG Location: 51484-52129 bp Feature: domain Description: UlaG Location: 51484-52129 bp Feature: gene Location: 52344-53696 bp Feature: gene Location: 54132-55547 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54483-55101 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 54483 -55101 bp Feature: domain Description: GIIM Note: maturase Location: 55155-55383 bp Feature: domain Description: GIIM Note: maturase Location: 55155-553 83 bp Feature: gene Location: 56099-56785 bp Feature: domain Description: NapF Location: 56108-56300 bp Feature: domain Description: NapF Location: 56108-563 00 bp Feature: gene Location: 56860-57402 bp Feature: domain Description: YcaC_related Location: 56893-57355 bp Feature: domain Description: YcaC_related Location: 56893 -573 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT UlaG (COG2220), RVT-GII, GIIM (pfam08388), NapF (COG1145), YcaC_related (cd01012)

Seq: VENA01000030.1 Firmicutes bacterium isolate MES13 c_000000000184, whole genome shotgun sequence (106911 bp)
Overview 1 RT 1: 33988-40789 bp Neighborhood of RT #1 [33988, 40800] spore_IV_B spore_0_A RVT-GII GIIM COG4825 MctB MctB Feature: gene Location: 33988-35307 bp Feature: domain Description: spore_IV_B Location: 34009-35269 bp Feature: domain Description: spore_IV_B Location: 34 009-35269 bp Feature: gene Location: 35530-36336 bp Feature: domain Description: spore_0_A Location: 35542-36334 bp Feature: domain Description: spore_0_A Location: 3554 2-36334 bp Feature: gene Location: 36986-38278 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37286-37922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37286-37922 bp Feature: domain Description: GIIM Note: maturase Location: 38000-38213 bp Feature: domain Description: GIIM Note: maturase Location: 38000-38213 bp Feature: gene Location: 38862-39986 bp Feature: domain Description: COG4825 Location: 38871-39924 bp Feature: domain Description: COG4 825 Location: 38871-39924 bp Feature: gene Location: 40000-40800 bp Feature: domain Description: MctB Location: 40012-40432 bp Feature: domain Description: MctB Location: 4 0012-4 04 32 bp Feature: domain Description: MctB Location: 40669-40789 bp Feature: domain Description: MctB Location: 4 0669-4 0789 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT spore_IV_B (TIGR02860), spore_0_A (TIGR02875), RVT-GII, GIIM (pfam08388), COG4825 (Uncharacterized membrane-anchored protein ), MctB (pfam11382)

Seq: VENA01000037.1 Firmicutes bacterium isolate MES13 c_000000000359, whole genome shotgun sequence (53124 bp)
Overview 1 RT 1: 162-2652 bp Neighborhood of RT #1 [162, 2750] RVT-GII GIIM RES Feature: gene Location: 162-800 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165-411 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165 -411 bp Feature: domain Description: GIIM Note: maturase Location: 492-711 bp Feature: domain Description: GIIM Note: maturase Location: 492-711 bp Feature: gene Location: 983-1546 bp Feature: gene Location: 1728-2750 bp Feature: domain Description: RES Location: 2223-2652 bp Feature: domain Description: RES Location: 2223-265 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), RES (smart00953)

Seq: VENA01000011.1 Firmicutes bacterium isolate MES13 c_000000000438, whole genome shotgun sequence (42033 bp)
Overview 1 RT 1: 6471-11083 bp Neighborhood of RT #1 [6471, 11130] prismane_assoc Phage_holin_4_2 RVT-GII GIIM HutP PBP1_ABC_uncharacterized_transporter Feature: gene Location: 6471-6656 bp Feature: domain Description: prismane_assoc Location: 6480-6651 bp Feature: domain Description: prismane_assoc Location: 6 480-6 6 51 bp Feature: gene Location: 7005-7364 bp Feature: domain Description: Phage_holin_4_2 Location: 7047-7344 bp Feature: domain Description: Phage_holin_4_2 Location: 7047-7344 bp Feature: gene Location: 7794-9209 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8145-8763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8145-876 3 bp Feature: domain Description: GIIM Note: maturase Location: 8817-9045 bp Feature: domain Description: GIIM Note: maturase Location: 8817-9045 bp Feature: gene Location: 9392-9817 bp Feature: domain Description: HutP Location: 9410-9800 bp Feature: domain Description: HutP Location: 9410-9800 bp Feature: gene Location: 10135-11130 bp Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 10243-11083 bp Feature: domain Description: PBP1_ABC_uncharacterized_transporter Location: 10243-11083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prismane_assoc (TIGR03980), Phage_holin_4_2 (pfam04020), RVT-GII, GIIM (pfam08388), HutP (pfam09021), PBP1_ABC_uncharacterized_transporter

Seq: VENA01000047.1 Firmicutes bacterium isolate MES13 c_000000000555, whole genome shotgun sequence (28049 bp)
Overview 1 RT 1: 2646-7486 bp Neighborhood of RT #1 [2646, 8751] prismane_assoc Phage_holin_4_2 RVT-GII GIIM Cu_amine_oxidN1 SLH SLH Feature: gene Location: 2646-2831 bp Feature: domain Description: prismane_assoc Location: 2655-2826 bp Feature: domain Description: prismane_assoc Location: 2655-2826 bp Feature: gene Location: 3182-3541 bp Feature: domain Description: Phage_holin_4_2 Location: 3224-3521 bp Feature: domain Description: Phage_holin_4_2 Location: 3224-3521 bp Feature: gene Location: 3971-5386 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4322-4940 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4322-4940 bp Feature: domain Description: GIIM Note: maturase Location: 4994-5222 bp Feature: domain Description: GIIM Note: maturase Location: 4994-5222 bp Feature: gene Location: 5649-6701 bp Feature: domain Description: Cu_amine_oxidN1 Location: 6255-6531 bp Feature: domain Description: Cu_amine_oxidN1 Location: 6255-6531 bp Feature: gene Location: 6859-8751 bp Feature: domain Description: SLH Location: 6952-7078 bp Feature: domain Description: SLH Location: 6952-7 07 8 bp Feature: domain Description: SLH Location: 7396-7486 bp Feature: domain Description: SLH Location: 7 396-7 486 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT prismane_assoc (TIGR03980), Phage_holin_4_2 (pfam04020), RVT-GII, GIIM (pfam08388), Cu_amine_oxidN1 (pfam07833), SLH (pfam00395)

Seq: VENA01000014.1 Firmicutes bacterium isolate MES13 c_000000000807, whole genome shotgun sequence (12672 bp)
Overview 1 RT 1: 2972-9201 bp Neighborhood of RT #1 [2972, 9206] MurA DUF1779 RVT-GII GIIM atpC KOG1350 Feature: gene Location: 2972-4222 bp Feature: domain Description: MurA Location: 2975-4217 bp Feature: domain Description: MurA Location: 2975-4217 bp Feature: gene Location: 4239-5030 bp Feature: domain Description: DUF1779 Location: 4398-5028 bp Feature: domain Description: DUF1779 Location: 4398 -5028 bp Feature: gene Location: 5400-6815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5751-6369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5751-6369 bp Feature: domain Description: GIIM Note: maturase Location: 6423-6651 bp Feature: domain Description: GIIM Note: maturase Location: 6423-6651 bp Feature: gene Location: 7250-7693 bp Feature: domain Description: atpC Location: 7289-7676 bp Feature: domain Description: atpC Location: 728 9-7676 bp Feature: gene Location: 7764-9206 bp Feature: domain Description: KOG1350 Location: 7794-9201 bp Feature: domain Description: KOG1350 Location: 7794-9201 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MurA (COG0766), DUF1779 (pfam08680), RVT-GII, GIIM (pfam08388), atpC (PRK14736), KOG1350 (KOG1350, F0F1-type ATP synthase, beta subunit )

Seq: VENA01000042.1 Firmicutes bacterium isolate MES13 c_000000000881, whole genome shotgun sequence (10149 bp)
Overview 1 RT 1: 6540-9882 bp Neighborhood of RT #1 [6540, 10004] RVT-GII GIIM SIR2 Feature: gene Location: 6540-7088 bp Feature: gene Location: 7095-7229 bp Feature: gene Location: 7251-7928 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7266-7557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7266-7557 bp Feature: domain Description: GIIM Note: maturase Location: 7635-7839 bp Feature: domain Description: GIIM Note: maturase Location: 7635-7839 bp Feature: gene Location: 8130-8783 bp Feature: gene Location: 8889-10004 bp Feature: domain Description: SIR2 Location: 8931-9882 bp Feature: domain Description: SIR2 Location: 89 31-9 882 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), SIR2 (pfam02146)

Seq: VENA01000086.1 Firmicutes bacterium isolate MES13 c_000000001095, whole genome shotgun sequence (5611 bp)
Overview 1 RT 1: 3-5611 bp Neighborhood of RT #1 [3, 5610] RVT-GII GIIM PRK06246 PRK06842 Gin RVT-GII Feature: gene Location: 3-812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-381 bp Feature: domain Description: GIIM Note: maturase Location: 423-651 bp Feature: domain Description: GIIM Note: maturase Location: 423-651 bp Feature: gene Location: 1049-1888 bp Feature: domain Description: PRK06246 Location: 1052-1886 bp Feature: domain Description: PRK06246 Location: 10 52-1886 bp Feature: gene Location: 1897-2451 bp Feature: domain Description: PRK06842 Location: 1909-2446 bp Feature: domain Description: PRK06842 Location: 1909-2446 bp Feature: gene Location: 3630-4133 bp Feature: gene Location: 4248-4439 bp Feature: domain Description: Gin Location: 4272-4404 bp Feature: domain Description: Gin Location: 4272-4404 bp Feature: gene Location: 5179-5610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5392-5611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5392-5611 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PRK06246 (fumarate hydratase; Provisional), PRK06842 (Fe-S-containing hydro-lyase), Gin (pfam10764)