myRT

myRT report for GCA_009711935.1_ASM971193v1

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Seq: VIKX01000015.1 Dolichospermum sp. UHCC 0259 scaffold15_cov0, whole genome shotgun sequence (13663 bp)
Overview 1 RT 1: 119-4176 bp Neighborhood of RT #1 [119, 4181] TldD RVT-UG17 SLATT_5 DUF3386 Feature: gene Location: 119-832 bp Feature: domain Description: TldD Location: 140-818 bp Feature: domain Description: TldD Location: 1 40-81 8 bp Feature: gene Location: 1012-2481 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1285-1897 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 1 285-1 897 bp Feature: gene Location: 2685-3308 bp Feature: domain Description: SLATT_5 Location: 2712-3291 bp Feature: domain Description: SLATT_5 Location: 271 2-3291 bp Feature: gene Location: 3537-4181 bp Feature: domain Description: DUF3386 Location: 3549-4176 bp Feature: domain Description: DUF3386 Location: 3549-41 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TldD (COG0312), RVT-UG17, SLATT_5 (pfam18160), DUF3386 (pfam11866)

Seq: VIKX01000181.1 Dolichospermum sp. UHCC 0259 scaffold181_cov0, whole genome shotgun sequence (47626 bp)
Overview 1 RT 1: 7551-12262 bp Neighborhood of RT #1 [7551, 12282] YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 7551-7682 bp Feature: gene Location: 7739-7975 bp Feature: domain Description: YfmG Location: 7745-7850 bp Feature: domain Description: YfmG Location: 7745-7850 bp Feature: gene Location: 8003-9079 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 8213-8852 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 82 13-8852 bp Feature: gene Location: 9082-9426 bp Feature: domain Description: Avd_like Location: 9100-9406 bp Feature: domain Description: Avd_like Location: 9100-9406 bp Feature: gene Location: 9610-12282 bp Feature: domain Description: YfmG Location: 11389-12262 bp Feature: domain Description: YfmG Location: 11389-12 2 62 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: VIKX01000187.1 Dolichospermum sp. UHCC 0259 scaffold187_cov0, whole genome shotgun sequence (181958 bp)
Overview 1 RT 1: 86226-90333 bp Neighborhood of RT #1 [86226, 90494] RVT-UG7 Uma2 Feature: gene Location: 86226-86738 bp Feature: gene Location: 86956-87174 bp Feature: gene Location: 87500-89152 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 87938-88361 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 8793 8-883 61 bp Feature: gene Location: 89412-89681 bp Feature: gene Location: 89766-90494 bp Feature: domain Description: Uma2 Location: 89826-90333 bp Feature: domain Description: Uma2 Location: 89826-903 3 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG7, Uma2 (pfam05685)

Seq: VIKX01000199.1 Dolichospermum sp. UHCC 0259 scaffold199_cov0, whole genome shotgun sequence (47399 bp)
Overview 1 RT 1: 39052-42914 bp Neighborhood of RT #1 [39052, 42934] RelE DUF4926 RVT-UG28b RAYT PIN_VapC4-5_FitB-like Feature: gene Location: 39052-39426 bp Feature: domain Description: RelE Location: 39082-39361 bp Feature: domain Description: RelE Location: 39082-39361 bp Feature: gene Location: 39395-39667 bp Feature: domain Description: DUF4926 Location: 39443-39614 bp Feature: domain Description: DUF4 926 Location: 394 4 3-39614 bp Feature: gene Location: 39789-41486 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 40215-40902 bp Feature: RT Description: RVT-UG28b Note: UG28b RT Location: 4 0215-4 0902 bp Feature: gene Location: 41816-42358 bp Feature: domain Description: RAYT Location: 41819-42266 bp Feature: domain Description: RAYT Location: 4 1819-4 2266 bp Feature: gene Location: 42518-42934 bp Feature: domain Description: PIN_VapC4-5_FitB-like Location: 42533-42914 bp Feature: domain Description: PIN_VapC4 -5_FitB-like Location: 4 2533-4 2914 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RelE (pfam06296), DUF4926 (pfam16277), RVT-UG28b, RAYT (COG1943), PIN_VapC4-5_FitB-like (cd18754)

Seq: VIKX01000290.1 Dolichospermum sp. UHCC 0259 scaffold290_cov0, whole genome shotgun sequence (7709 bp)
Overview 1 RT 1: 2553-7595 bp Neighborhood of RT #1 [2553, 7642] AAA_25 RVT_N RVT-GII GIIM McrA Feature: gene Location: 2553-2723 bp Feature: gene Location: 2892-5063 bp Feature: domain Description: AAA_25 Location: 3636-4155 bp Feature: domain Description: AAA_25 Location: 3636-415 5 bp Feature: gene Location: 5879-7642 bp Feature: domain Description: RVT_N Location: 5924-6170 bp Feature: domain Description: RVT_N Location: 5 924-6170 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6212-6896 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6212-6896 bp Feature: domain Description: GIIM Note: maturase Location: 6998-7232 bp Feature: domain Description: GIIM Note: maturase Location: 6998-7232 bp Feature: domain Description: McrA Location: 7328-7595 bp Feature: domain Description: McrA Location: 7328-75 95 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_25 (pfam13481), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: VIKX01000319.1 Dolichospermum sp. UHCC 0259 scaffold319_cov0, whole genome shotgun sequence (2166 bp)
Overview 1 RT 1: 60-2163 bp Neighborhood of RT #1 [60, 2163] RVT_N RVT-GII McrA Feature: gene Location: 60-1634 bp Feature: domain Description: RVT_N Location: 96-342 bp Feature: domain Description: RVT_N Location: 96 -342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1050 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 393-1050 bp Feature: domain Description: McrA Location: 1284-1605 bp Feature: domain Description: McrA Location: 1284-16 05 bp Feature: gene Location: 1752-1970 bp Feature: gene Location: 1981-2163 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)