myRT

myRT report for GCA_009711965.1_ASM971196v1

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Seq: VIKV01000116.1 Dolichospermum sp. UHCC 0299 scaffold118_cov0, whole genome shotgun sequence (29317 bp)
Overview 1 RT 1: 2788-7650 bp Neighborhood of RT #1 [2788, 7667] Tab2_like RVT_N RVT-GII McrA MPP_PPP_family YfgC Feature: gene Location: 2788-3585 bp Feature: domain Description: Tab2_like Location: 2803-3574 bp Feature: domain Description: Tab2_like Location: 2803-3574 bp Feature: gene Location: 3685-3927 bp Feature: gene Location: 4229-5713 bp Feature: domain Description: RVT_N Location: 4235-4421 bp Feature: domain Description: RVT_N Location: 4235-4421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4472-5129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4472-51 29 bp Feature: domain Description: McrA Location: 5360-5684 bp Feature: domain Description: McrA Location: 5360-5684 bp Feature: gene Location: 6042-6803 bp Feature: domain Description: MPP_PPP_family Location: 6069-6519 bp Feature: domain Description: MPP_PPP_family Location: 6069-651 9 bp Feature: gene Location: 6804-7667 bp Feature: domain Description: YfgC Location: 6879-7650 bp Feature: domain Description: YfgC Location: 6879-7650 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tab2_like, RVT_N (pfam13655), RVT-GII, McrA (COG4058), MPP_PPP_family (cd00144), YfgC (COG4783)

Seq: VIKV01000122.1 Dolichospermum sp. UHCC 0299 scaffold124_cov0, whole genome shotgun sequence (2151 bp)
Overview 1 RT 1: 80-1793 bp Neighborhood of RT #1 [80, 1819] RVT_N RVT-GII McrA Feature: gene Location: 80-1819 bp Feature: domain Description: RVT_N Location: 299-539 bp Feature: domain Description: RVT_N Location: 2 99-539 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596-1253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 596-12 53 bp Feature: domain Description: McrA Location: 1484-1793 bp Feature: domain Description: McrA Location: 1484-1793 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, McrA (COG4058)

Seq: VIKV01000136.1 Dolichospermum sp. UHCC 0299 scaffold138_cov0, whole genome shotgun sequence (19348 bp)
Overview 1 RT 1: 12278-14733 bp Neighborhood of RT #1 [12278, 15086] DUF3349 KOG4529 RVT-Retrons TIGR02231 Feature: gene Location: 12278-12571 bp Feature: domain Description: DUF3349 Location: 12305-12446 bp Feature: domain Description: DUF3 3 49 Location: 123 05-12446 bp Feature: gene Location: 12658-13029 bp Feature: domain Description: KOG4529 Location: 12760-13024 bp Feature: domain Description: KOG4529 Location: 12760-13 024 bp Feature: gene Location: 13609-13914 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13783-13891 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 13 783 -13 891 bp Feature: gene Location: 13950-14207 bp Feature: gene Location: 14211-15086 bp Feature: domain Description: TIGR02231 Location: 14235-14733 bp Feature: domain Description: TIGR0223 1 Location: 1423 5-1473 3 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3349 (pfam11829), KOG4529 (KOG4529, Uncharacterized conserved protein ), RVT-Retrons, TIGR02231 (conserved hypothetical protein)

Seq: VIKV01000169.1 Dolichospermum sp. UHCC 0299 scaffold171_cov0, whole genome shotgun sequence (15774 bp)
Overview 1 RT 1: 2508-8407 bp Neighborhood of RT #1 [2508, 8424] RTPR PRK07773 intein_Cterm RTPR RVT_N RVT-GII GIIM McrA RNR_II_monomer Feature: gene Location: 2508-5225 bp Feature: domain Description: RTPR Location: 2511-3054 bp Feature: domain Description: RTPR Location: 2511-3054 bp Feature: domain Description: PRK07773 Location: 3054-3849 bp Feature: domain Description: PRK07773 Location: 3054 -384 9 bp Feature: domain Description: intein_Cterm Location: 4083-4143 bp Feature: domain Description: intein_Cterm Location: 4 083-4 14 3 bp Feature: domain Description: RTPR Location: 4143-5202 bp Feature: domain Description: RTPR Location: 4 14 3-5202 bp Feature: gene Location: 5334-5585 bp Feature: gene Location: 5626-7365 bp Feature: domain Description: RVT_N Location: 5668-5914 bp Feature: domain Description: RVT_N Location: 5668-5914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5956-6640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5956-664 0 bp Feature: domain Description: GIIM Note: maturase Location: 6742-6973 bp Feature: domain Description: GIIM Note: maturase Location: 674 2-6973 bp Feature: domain Description: McrA Location: 7069-7339 bp Feature: domain Description: McrA Location: 7069-7339 bp Feature: gene Location: 7510-7758 bp Feature: gene Location: 8008-8424 bp Feature: domain Description: RNR_II_monomer Location: 8098-8407 bp Feature: domain Description: RNR_II_monomer Location: 8098-84 07 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RTPR (TIGR02505), PRK07773 (replicative DNA helicase; Validated), intein_Cterm (TIGR01443), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), RNR_II_monomer (cd01676)

Seq: VIKV01000283.1 Dolichospermum sp. UHCC 0299 scaffold289_cov0, whole genome shotgun sequence (18865 bp)
Overview 1 RT 1: 14596-18157 bp Neighborhood of RT #1 [14596, 18396] MrcB RVT_N RVT-GII GIIM Feature: gene Location: 14596-16518 bp Feature: domain Description: MrcB Location: 14695-16495 bp Feature: domain Description: MrcB Location: 14695 -16495 bp Feature: gene Location: 16534-16839 bp Feature: gene Location: 16912-18396 bp Feature: domain Description: RVT_N Location: 16948-17194 bp Feature: domain Description: RVT_N Location: 16948-17194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17245-17902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17245 -17902 bp Feature: domain Description: GIIM Note: maturase Location: 17959-18157 bp Feature: domain Description: GIIM Note: maturase Location: 1795 9-1815 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MrcB (COG0744), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VIKV01000008.1 Dolichospermum sp. UHCC 0299 scaffold8_cov0, whole genome shotgun sequence (46537 bp)
Overview 1 RT 1: 16262-20946 bp Neighborhood of RT #1 [16262, 20966] YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 16262-18004 bp Feature: domain Description: YfmG Location: 17141-17984 bp Feature: domain Description: YfmG Location: 17141-17984 bp Feature: gene Location: 18038-18310 bp Feature: gene Location: 18508-19590 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18718-19360 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18718-1936 0 bp Feature: gene Location: 19662-20006 bp Feature: domain Description: Avd_like Location: 19680-19986 bp Feature: domain Description: Avd_like Location: 196 80-19986 bp Feature: gene Location: 20115-20966 bp Feature: domain Description: YfmG Location: 20151-20946 bp Feature: domain Description: YfmG Location: 20151-20946 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)