myRT

myRT report for GCA_009712025.1_ASM971202v1

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Seq: VILA01000015.1 Dolichospermum sp. UHCC 0406 scaffold15_cov311, whole genome shotgun sequence (220786 bp)
Overview 1 RT 1: 61173-63856 bp Neighborhood of RT #1 [61173, 63981] TIGR02231 RVT-Retrons KOG4529 DUF3349 Feature: gene Location: 61173-62048 bp Feature: domain Description: TIGR02231 Location: 61197-61695 bp Feature: domain Description: TIGR02231 Location: 61 1 97-61 695 bp Feature: gene Location: 62052-62309 bp Feature: gene Location: 62345-62650 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 62519-62627 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6251 9-62627 bp Feature: gene Location: 63230-63601 bp Feature: domain Description: KOG4529 Location: 63332-63596 bp Feature: domain Description: KOG4529 Location: 63332-63596 bp Feature: gene Location: 63688-63981 bp Feature: domain Description: DUF3349 Location: 63715-63856 bp Feature: domain Description: DUF3349 Location: 6371 5-63856 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02231 (conserved hypothetical protein), RVT-Retrons, KOG4529 (KOG4529, Uncharacterized conserved protein ), DUF3349 (pfam11829)

Seq: VILA01000019.1 Dolichospermum sp. UHCC 0406 scaffold19_cov315, whole genome shotgun sequence (250063 bp)
Overview 1 RT 1: 204432-210129 bp Neighborhood of RT #1 [204432, 210152] CbpA TPR DUF1825 RVT_N RVT-GII GIIM MrcB Feature: gene Location: 204432-205358 bp Feature: domain Description: CbpA Location: 204477-204834 bp Feature: domain Description: CbpA Location: 2 04477-2 04834 bp Feature: domain Description: TPR Location: 205029-205260 bp Feature: domain Description: TPR Location: 2 0502 9-2 052 60 bp Feature: gene Location: 205523-205825 bp Feature: domain Description: DUF1825 Location: 205526-205817 bp Feature: domain Description: DUF182 5 Location: 2 0552 6-2 05817 bp Feature: gene Location: 206352-207836 bp Feature: domain Description: RVT_N Location: 206388-206634 bp Feature: domain Description: RVT_N Location: 2 06388-2 06634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 206685-207342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 06685-2 07342 bp Feature: domain Description: GIIM Note: maturase Location: 207399-207597 bp Feature: domain Description: GIIM Note: maturase Location: 2 07399-2 07597 bp Feature: gene Location: 207909-208214 bp Feature: gene Location: 208230-210152 bp Feature: domain Description: MrcB Location: 208329-210129 bp Feature: domain Description: MrcB Location: 2 0832 9-2 1012 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CbpA (COG2214), TPR (smart00028), DUF1825 (pfam08855), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), MrcB (COG0744)

Seq: VILA01000026.1 Dolichospermum sp. UHCC 0406 scaffold26_cov323, whole genome shotgun sequence (406835 bp)
Overview 1 RT 1: 132120-138013 bp Neighborhood of RT #1 [132120, 138036] RNR_II_monomer RVT_N RVT-GII GIIM McrA RTPR PRK07773 intein_Cterm RTPR Feature: gene Location: 132120-132536 bp Feature: domain Description: RNR_II_monomer Location: 132210-132519 bp Feature: domain Description: RNR_II_monomer Location: 13 2210-13 2519 bp Feature: gene Location: 132786-133034 bp Feature: gene Location: 133179-134918 bp Feature: domain Description: RVT_N Location: 133221-133467 bp Feature: domain Description: RVT_N Location: 13 3 221-13 3 467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 133509-134193 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 3 509-13 4193 bp Feature: domain Description: GIIM Note: maturase Location: 134295-134526 bp Feature: domain Description: GIIM Note: maturase Location: 13 4295-13 4526 bp Feature: domain Description: McrA Location: 134622-134892 bp Feature: domain Description: McrA Location: 13 4622-13 4892 bp Feature: gene Location: 134959-135210 bp Feature: gene Location: 135319-138036 bp Feature: domain Description: RTPR Location: 135322-135865 bp Feature: domain Description: RTPR Location: 13 53 22-13 5865 bp Feature: domain Description: PRK07773 Location: 135865-136660 bp Feature: domain Description: PRK07773 Location: 13 5865-13 6660 bp Feature: domain Description: intein_Cterm Location: 136894-136954 bp Feature: domain Description: intein_Cterm Location: 13 6894-13 6954 bp Feature: domain Description: RTPR Location: 136954-138013 bp Feature: domain Description: RTPR Location: 13 6954-13 8013 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RNR_II_monomer (cd01676), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058), RTPR (TIGR02505), PRK07773 (replicative DNA helicase; Validated), intein_Cterm (TIGR01443)

Seq: VILA01000028.1 Dolichospermum sp. UHCC 0406 scaffold28_cov359, whole genome shotgun sequence (52318 bp)
Overview 1 RT 1: 16357-21041 bp Neighborhood of RT #1 [16357, 21061] YfmG RVT-DGRs Avd_like YfmG Feature: gene Location: 16357-18099 bp Feature: domain Description: YfmG Location: 17236-18079 bp Feature: domain Description: YfmG Location: 17236-18079 bp Feature: gene Location: 18133-18405 bp Feature: gene Location: 18603-19685 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18813-19455 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 18813-194 55 bp Feature: gene Location: 19757-20101 bp Feature: domain Description: Avd_like Location: 19775-20081 bp Feature: domain Description: Avd_like Location: 19775-20081 bp Feature: gene Location: 20210-21061 bp Feature: domain Description: YfmG Location: 20246-21041 bp Feature: domain Description: YfmG Location: 2024 6-2104 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YfmG (COG1262), RVT-DGRs, Avd_like (cd16376)

Seq: VILA01000050.1 Dolichospermum sp. UHCC 0406 scaffold50_cov1092, whole genome shotgun sequence (1514 bp)
Overview 1 RT 1: 3-1335 bp Neighborhood of RT #1 [3, 1511] RVT_N RVT-GII GIIM Feature: gene Location: 3-1511 bp Feature: domain Description: RVT_N Location: 123-363 bp Feature: domain Description: RVT_N Location: 123-363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1077 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 420-1077 bp Feature: domain Description: GIIM Note: maturase Location: 1134-1335 bp Feature: domain Description: GIIM Note: maturase Location: 1134-1335 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: VILA01000008.1 Dolichospermum sp. UHCC 0406 scaffold8_cov324, whole genome shotgun sequence (88655 bp)
Overview 1 RT 1: 2845-7707 bp Neighborhood of RT #1 [2845, 7724] Tab2_like RVT_N RVT-GII McrA MPP_PPP_family YfgC Feature: gene Location: 2845-3642 bp Feature: domain Description: Tab2_like Location: 2860-3631 bp Feature: domain Description: Tab2_like Location: 286 0-36 31 bp Feature: gene Location: 3742-3984 bp Feature: gene Location: 4286-5770 bp Feature: domain Description: RVT_N Location: 4292-4478 bp Feature: domain Description: RVT_N Location: 4292-4478 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4529-5186 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4529-5186 bp Feature: domain Description: McrA Location: 5417-5741 bp Feature: domain Description: McrA Location: 5417-5741 bp Feature: gene Location: 6099-6860 bp Feature: domain Description: MPP_PPP_family Location: 6126-6576 bp Feature: domain Description: MPP_PPP_family Location: 6 126 -6 576 bp Feature: gene Location: 6861-7724 bp Feature: domain Description: YfgC Location: 6936-7707 bp Feature: domain Description: YfgC Location: 6 936 -7707 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tab2_like, RVT_N (pfam13655), RVT-GII, McrA (COG4058), MPP_PPP_family (cd00144), YfgC (COG4783)