myRT

myRT report for GCA_009712065.1_ASM971206v1

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Seq: VILC01000157.1 Aphanizomenon sp. UHCC 0183 scaffold157_cov0, whole genome shotgun sequence (3891 bp)
Overview 1 RT 1: 152-3569 bp Neighborhood of RT #1 [152, 3569] RVT-GII McrA RVT_N RVT-GII YadD Feature: gene Location: 152-1099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 158-515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 58-51 5 bp Feature: domain Description: McrA Location: 746-1070 bp Feature: domain Description: McrA Location: 746-1 070 bp Feature: gene Location: 1188-1697 bp Feature: domain Description: RVT_N Location: 1224-1470 bp Feature: domain Description: RVT_N Location: 1 224-1 470 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1521-1686 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 521 -1 686 bp Feature: gene Location: 2260-2856 bp Feature: domain Description: YadD Location: 2263-2680 bp Feature: domain Description: YadD Location: 2263-2680 bp Feature: gene Location: 2925-3569 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, McrA (COG4058), RVT_N (pfam13655), YadD (COG5464)

Seq: VILC01000019.1 Aphanizomenon sp. UHCC 0183 scaffold19_cov0, whole genome shotgun sequence (70066 bp)
Overview 1 RT 1: 52844-59167 bp Neighborhood of RT #1 [52844, 59167] XisH HicB RVT-UG12 ahcY Feature: gene Location: 52844-53263 bp Feature: domain Description: XisH Location: 52847-53246 bp Feature: domain Description: XisH Location: 52 847-532 46 bp Feature: gene Location: 53335-53556 bp Feature: domain Description: HicB Location: 53338-53518 bp Feature: domain Description: HicB Location: 53338-53518 bp Feature: gene Location: 54313-56001 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 54739-55195 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 54739-55195 bp Feature: gene Location: 56462-57739 bp Feature: domain Description: ahcY Location: 56522-57737 bp Feature: domain Description: ahcY Location: 5652 2 -57737 bp Feature: gene Location: 58358-59167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT XisH (pfam08814), HicB (pfam05534), RVT-UG12, ahcY (TIGR00936)

Seq: VILC01000089.1 Aphanizomenon sp. UHCC 0183 scaffold89_cov0, whole genome shotgun sequence (17468 bp)
Overview 1 RT 1: 14511-17033 bp Neighborhood of RT #1 [14511, 17033] RVT_N RVT-GII GIIM McrA Feature: gene Location: 14511-14663 bp Feature: gene Location: 14687-14836 bp Feature: gene Location: 14909-16651 bp Feature: domain Description: RVT_N Location: 14942-15185 bp Feature: domain Description: RVT_N Location: 14942-15185 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15230-15926 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1523 0-15926 bp Feature: domain Description: GIIM Note: maturase Location: 16028-16259 bp Feature: domain Description: GIIM Note: maturase Location: 16028-16259 bp Feature: domain Description: McrA Location: 16352-16616 bp Feature: domain Description: McrA Location: 163 52-16616 bp Feature: gene Location: 16836-17033 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: VILC01000092.1 Aphanizomenon sp. UHCC 0183 scaffold92_cov0, whole genome shotgun sequence (39144 bp)
Overview 1 RT 1: 34023-38822 bp Neighborhood of RT #1 [34023, 38851] YadD RVT_N RVT-GII GIIM HNH RVT_N RVT-GII McrA Feature: gene Location: 34023-34265 bp Feature: gene Location: 34631-34846 bp Feature: domain Description: YadD Location: 34634-34823 bp Feature: domain Description: YadD Location: 34 634 -34 823 bp Feature: gene Location: 34943-36601 bp Feature: domain Description: RVT_N Location: 34994-35237 bp Feature: domain Description: RVT_N Location: 34 994 -35237 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35279-35903 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35279-35903 bp Feature: domain Description: GIIM Note: maturase Location: 35963-36188 bp Feature: domain Description: GIIM Note: maturase Location: 35963-36188 bp Feature: domain Description: HNH Note: nucleases Location: 36440-36578 bp Feature: domain Description: HNH Note: nucleases Location: 364 4 0-36578 bp Feature: gene Location: 36789-37115 bp Feature: gene Location: 37277-38851 bp Feature: domain Description: RVT_N Location: 37313-37559 bp Feature: domain Description: RVT_N Location: 37313-37559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37610-38267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 37610-38267 bp Feature: domain Description: McrA Location: 38498-38822 bp Feature: domain Description: McrA Location: 384 98-38822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YadD (COG5464), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), McrA (COG4058)

Seq: VILC01000009.1 Aphanizomenon sp. UHCC 0183 scaffold9_cov0, whole genome shotgun sequence (177534 bp)
Overview 1 RT 1: 10081-14955 bp Neighborhood of RT #1 [10081, 14972] AAA_22 YdjM RVT-DGRs Avd_like YfmG Feature: gene Location: 10081-11043 bp Feature: domain Description: AAA_22 Location: 10294-10624 bp Feature: domain Description: AAA_22 Location: 10294-10624 bp Feature: gene Location: 11043-12086 bp Feature: domain Description: YdjM Location: 11046-11496 bp Feature: domain Description: YdjM Location: 11046-11496 bp Feature: gene Location: 12436-13494 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12646-13288 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 12646-13288 bp Feature: gene Location: 13566-13910 bp Feature: domain Description: Avd_like Location: 13584-13890 bp Feature: domain Description: Avd_like Location: 135 84-13890 bp Feature: gene Location: 14091-14972 bp Feature: domain Description: YfmG Location: 14145-14955 bp Feature: domain Description: YfmG Location: 14145 -1495 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AAA_22 (pfam13401), YdjM (pfam04307), RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)