myRT

myRT report for GCA_009712125.1_ASM971212v1

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Seq: VILF01000001.1 Dolichospermum flos-aquae UHCC 0037 newAn37_scaffold1, whole genome shotgun sequence (1818114 bp)
Overview 1 RT 1: 674327-680656 bp 2 RT 2: 1480973-1485552 bp 3 RT 3: 1592523-1600507 bp 4 RT 4: 1623171-1626465 bp Neighborhood of RT #1 [674327, 680670] GloA RVT_N RVT-GII McrA TPR_12 TPR_12 COG4995 DUF928 Neighborhood of RT #2 [1480973, 1485552] 2TM RVT-GII GIIM RVT_N RVT-GII GIIM Neighborhood of RT #3 [1592523, 1600509] DUF5118 DUF5117 DUF4953 VacB RVT_N RVT-GII McrA rps18 rpl33 Neighborhood of RT #4 [1623171, 1626653] HTH_XRE DZR RVT-GII KOG2665 KR_2_FAS_SDR_x KOG1202 Feature: gene Location: 674327-674776 bp Feature: domain Description: GloA Location: 674372-674759 bp Feature: domain Description: GloA Location: 674372-674759 bp Feature: gene Location: 675328-675546 bp Feature: gene Location: 675666-677240 bp Feature: RT Description: RVT_N Location: 675702-675948 bp Feature: RT Description: RVT_N Location: 675702-675948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675999-676656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 675999-676656 bp Feature: domain Description: McrA Location: 676887-677211 bp Feature: domain Description: McrA Location: 676887-67721 1 bp Feature: gene Location: 677403-679529 bp Feature: domain Description: TPR_12 Location: 677412-677538 bp Feature: domain Description: TPR_1 2 Location: 67741 2-677538 bp Feature: domain Description: TPR_12 Location: 677958-678135 bp Feature: domain Description: TPR_1 2 Location: 677958-6781 35 bp Feature: domain Description: COG4995 Location: 678267-679524 bp Feature: domain Description: COG4995 Location: 678267-679524 bp Feature: gene Location: 679723-680670 bp Feature: domain Description: DUF928 Location: 680071-680656 bp Feature: domain Description: DUF928 Location: 680071 -680656 bp Feature: gene Location: 1480973-1481341 bp Feature: domain Description: 2TM Location: 1481168-1481330 bp Feature: domain Description: 2TM Location: 1 481 1 68-1 481 330 bp Feature: gene Location: 1481854-1482009 bp Feature: gene Location: 1482065-1482988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1482089-1482458 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 482089-1 482458 bp Feature: domain Description: GIIM Note: maturase Location: 1482515-1482713 bp Feature: domain Description: GIIM Note: maturase Location: 1 48251 5-1 48271 3 bp Feature: gene Location: 1483258-1484751 bp Feature: RT Description: RVT_N Location: 1483294-1483534 bp Feature: RT Description: RVT_N Location: 1 483294-1 483534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1483591-1484248 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 483591 -1 484248 bp Feature: domain Description: GIIM Note: maturase Location: 1484305-1484494 bp Feature: domain Description: GIIM Note: maturase Location: 1 484305-1 484494 bp Feature: gene Location: 1485102-1485317 bp Feature: gene Location: 1485334-1485552 bp Feature: gene Location: 1592523-1595390 bp Feature: domain Description: DUF5118 Location: 1592868-1593009 bp Feature: domain Description: DUF51 1 8 Location: 1 592868-1 593009 bp Feature: domain Description: DUF5117 Location: 1593048-1593594 bp Feature: domain Description: DUF51 1 7 Location: 1 593048-1 593594 bp Feature: domain Description: DUF4953 Location: 1594167-1595136 bp Feature: domain Description: DUF4953 Location: 1 5941 67-1 5951 36 bp Feature: gene Location: 1595535-1597595 bp Feature: domain Description: VacB Location: 1595598-1597479 bp Feature: domain Description: VacB Location: 1 595598-1 597479 bp Feature: gene Location: 1597974-1599545 bp Feature: RT Description: RVT_N Location: 1598010-1598250 bp Feature: RT Description: RVT_N Location: 1 59801 0-1 598250 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1598307-1598961 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 598307-1 598961 bp Feature: domain Description: McrA Location: 1599195-1599516 bp Feature: domain Description: McrA Location: 1 5991 95-1 59951 6 bp Feature: gene Location: 1600097-1600312 bp Feature: domain Description: rps18 Location: 1600106-1600307 bp Feature: domain Description: rps1 8 Location: 1 6001 06-1 600307 bp Feature: gene Location: 1600315-1600509 bp Feature: domain Description: rpl33 Location: 1600318-1600507 bp Feature: domain Description: rpl33 Location: 1 60031 8-1 600507 bp Feature: gene Location: 1623171-1623626 bp Feature: domain Description: HTH_XRE Location: 1623228-1623387 bp Feature: domain Description: HTH_XRE Location: 1 623228-1 623387 bp Feature: domain Description: DZR Location: 1623441-1623597 bp Feature: domain Description: DZR Location: 1 623441 -1 623597 bp Feature: gene Location: 1623649-1623777 bp Feature: gene Location: 1624784-1624942 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1624790-1624931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 624790-1 624931 bp Feature: gene Location: 1625126-1625383 bp Feature: domain Description: KOG2665 Location: 1625156-1625279 bp Feature: domain Description: KOG2665 Location: 1 6251 56-1 625279 bp Feature: gene Location: 1625766-1626653 bp Feature: domain Description: KR_2_FAS_SDR_x Location: 1625775-1626153 bp Feature: domain Description: KR_2_FAS_SDR_x Location: 1 625775-1 6261 53 bp Feature: domain Description: KOG1202 Location: 1626327-1626465 bp Feature: domain Description: KOG1 202 Location: 1 626327-1 626465 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT GloA (COG0346), RVT_N (pfam13655), RVT-GII, McrA (COG4058), TPR_12 (pfam13424), COG4995 (Uncharacterized conserved protein, contains CHAT domain ), DUF928 (pfam06051), 2TM (pfam13239), GIIM (pfam08388), DUF5118 (pfam17162)
DUF5117 (pfam17148), DUF4953 (pfam16313), VacB (COG0557), rps18 (CHL00077), rpl33 (CHL00104), HTH_XRE (smart00530), DZR (pfam12773), KOG2665 (KOG2665, Predicted FAD-dependent oxidoreductase ), KR_2_FAS_SDR_x (cd08955), KOG1202 (KOG1202, Animal-type fatty acid synthase and related proteins )

Seq: VILF01000004.1 Dolichospermum flos-aquae UHCC 0037 newAn37_scaffold4, whole genome shotgun sequence (674579 bp)
Overview 1 RT 1: 264147-271566 bp 2 RT 2: 397708-403267 bp 3 RT 3: 416026-420936 bp 4 RT 4: 636721-641813 bp Neighborhood of RT #1 [264147, 271595] KOG0910 RVT_N RVT-GII McrA COG2452 DUF1400 COG4188 Neighborhood of RT #2 [397708, 403278] PRK07400 RVT_N RVT-GII McrA NADH_oxidase Gph Neighborhood of RT #3 [416026, 420959] InsQ RVT_N RVT-GII McrA InsQ PLN02449 Neighborhood of RT #4 [636721, 641929] InsQ RVT_N RVT-GII GIIM McrA COG3415 Feature: gene Location: 264147-264464 bp Feature: domain Description: KOG0910 Location: 264162-264453 bp Feature: domain Description: KOG0910 Location: 2 64162 -2 64453 bp Feature: gene Location: 264516-264791 bp Feature: gene Location: 265301-267451 bp Feature: RT Description: RVT_N Location: 265337-265583 bp Feature: RT Description: RVT_N Location: 2 65337-2 65583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265637-266291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 65637-2 662 91 bp Feature: domain Description: McrA Location: 266522-266831 bp Feature: domain Description: McrA Location: 2 6652 2 -2 66831 bp Feature: domain Description: COG2452 Location: 266894-267410 bp Feature: domain Description: COG2 452 Location: 2 66894-2 67410 bp Feature: gene Location: 268251-269510 bp Feature: gene Location: 269931-271595 bp Feature: domain Description: DUF1400 Location: 270033-270408 bp Feature: domain Description: DUF1400 Location: 2 70033-2 70408 bp Feature: domain Description: COG4188 Location: 270519-271566 bp Feature: domain Description: COG4188 Location: 2 70519-2 71566 bp Feature: gene Location: 397708-397920 bp Feature: gene Location: 398016-399056 bp Feature: domain Description: PRK07400 Location: 398022-398952 bp Feature: domain Description: PRK07400 Location: 39802 2 -398952 bp Feature: gene Location: 399839-401413 bp Feature: RT Description: RVT_N Location: 399875-400121 bp Feature: RT Description: RVT_N Location: 399875-40012 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400172-400829 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400172 -40082 9 bp Feature: domain Description: McrA Location: 401069-401384 bp Feature: domain Description: McrA Location: 401069-401384 bp Feature: gene Location: 401948-402475 bp Feature: domain Description: NADH_oxidase Location: 401984-402458 bp Feature: domain Description: NADH_oxidase Location: 401984-402 458 bp Feature: gene Location: 402547-403278 bp Feature: domain Description: Gph Location: 402586-403267 bp Feature: domain Description: Gph Location: 402 586-4032 67 bp Feature: gene Location: 416026-416214 bp Feature: gene Location: 416268-417092 bp Feature: domain Description: InsQ Location: 416271-417066 bp Feature: domain Description: InsQ Location: 4162 71-417066 bp Feature: gene Location: 417714-419168 bp Feature: RT Description: RVT_N Location: 417720-417900 bp Feature: RT Description: RVT_N Location: 41772 0-417900 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417957-418584 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 417957-418584 bp Feature: domain Description: McrA Location: 418818-419139 bp Feature: domain Description: McrA Location: 418818-419139 bp Feature: gene Location: 419281-419565 bp Feature: domain Description: InsQ Location: 419290-419533 bp Feature: domain Description: InsQ Location: 4192 90-419533 bp Feature: gene Location: 419793-420959 bp Feature: domain Description: PLN02449 Location: 419799-420936 bp Feature: domain Description: PLN02 449 Location: 419799-42 0936 bp Feature: gene Location: 636721-638097 bp Feature: domain Description: InsQ Location: 636841-637918 bp Feature: domain Description: InsQ Location: 636841-637918 bp Feature: gene Location: 638138-639001 bp Feature: gene Location: 639190-640803 bp Feature: RT Description: RVT_N Location: 639211-639337 bp Feature: RT Description: RVT_N Location: 6392 11-639337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 639382-640078 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 639382 -640078 bp Feature: domain Description: GIIM Note: maturase Location: 640180-640411 bp Feature: domain Description: GIIM Note: maturase Location: 640180-640411 bp Feature: domain Description: McrA Location: 640504-640768 bp Feature: domain Description: McrA Location: 640504-640768 bp Feature: gene Location: 640876-641181 bp Feature: gene Location: 641405-641929 bp Feature: domain Description: COG3415 Location: 641504-641813 bp Feature: domain Description: COG3415 Location: 641504-641813 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KOG0910 (KOG0910, Thioredoxin-like protein ), RVT_N (pfam13655), RVT-GII, McrA (COG4058), COG2452 (Predicted site-specific integrase-resolvase ), DUF1400 (pfam07176), COG4188 (Predicted dienelactone hydrolase ), PRK07400 (30S ribosomal protein S1; Reviewed), NADH_oxidase, Gph (COG0546)
InsQ (COG0675), PLN02449 (ferrochelatase), GIIM (pfam08388), COG3415 (Transposase )

Seq: VILF01000005.1 Dolichospermum flos-aquae UHCC 0037 newAn37_scaffold5, whole genome shotgun sequence (613144 bp)
Overview 1 RT 1: 439146-443432 bp Neighborhood of RT #1 [439146, 443432] HDAC_classII_APAH RVT_N RVT-GII wecB Feature: gene Location: 439146-440117 bp Feature: domain Description: HDAC_classII_APAH Location: 439233-440094 bp Feature: domain Description: HDAC_classII_APAH Location: 43 923 3 -440094 bp Feature: gene Location: 440901-441176 bp Feature: RT Description: RVT_N Location: 440946-441042 bp Feature: RT Description: RVT_N Location: 440946-441042 bp Feature: gene Location: 441178-441741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 441235-441685 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44123 5-441685 bp Feature: gene Location: 442134-443117 bp Feature: domain Description: wecB Location: 442137-443088 bp Feature: domain Description: wecB Location: 44213 7-443 088 bp Feature: gene Location: 443256-443432 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDAC_classII_APAH (cd10001), RVT_N (pfam13655), RVT-GII, wecB (TIGR00236)

Seq: VILF01000007.1 Dolichospermum flos-aquae UHCC 0037 newAn37_scaffold7, whole genome shotgun sequence (349430 bp)
Overview 1 RT 1: 234231-238035 bp Neighborhood of RT #1 [234231, 238035] AlbA_2 TPR TPR RVT-Retrons COG5550 Feature: gene Location: 234231-234545 bp Feature: gene Location: 234610-235677 bp Feature: domain Description: AlbA_2 Location: 234661-235081 bp Feature: domain Description: AlbA_2 Location: 234 661-235081 bp Feature: domain Description: TPR Location: 235204-235468 bp Feature: domain Description: TPR Location: 235204 -2354 68 bp Feature: domain Description: TPR Location: 235504-235600 bp Feature: domain Description: TPR Location: 235504 -235600 bp Feature: gene Location: 236072-237166 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 236252-236858 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 236252-236858 bp Feature: gene Location: 237344-237706 bp Feature: domain Description: COG5550 Location: 237347-237701 bp Feature: domain Description: COG5550 Location: 23734 7-237701 bp Feature: gene Location: 237703-238035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AlbA_2 (pfam04326), TPR (smart00028), RVT-Retrons, COG5550 (Predicted aspartyl protease )