myRT

myRT report for GCA_009712165.1_ASM971216v1

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Seq: WMKC01000091.1 Nocardia seriolae strain PY_31 NODE_149_length_25541_cov_29.751981, whole genome shotgun sequence (25541 bp)
Overview 1 RT 1: 22218-25479 bp Neighborhood of RT #1 [22218, 25479] DUF4096 DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 22218-22580 bp Feature: domain Description: DUF4096 Location: 22251-22479 bp Feature: domain Description: DUF4096 Location: 22251 -22479 bp Feature: gene Location: 22655-22990 bp Feature: domain Description: DDE_Tnp_1 Location: 22661-22910 bp Feature: domain Description: DDE_Tnp_1 Location: 22661 -2291 0 bp Feature: gene Location: 23448-25232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23709-24507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23709-24507 bp Feature: domain Description: Intron_maturas2 Location: 24624-24837 bp Feature: domain Description: Intron_maturas2 Location: 24624-24837 bp Feature: domain Description: HNHc Note: nucleases Location: 25032-25188 bp Feature: domain Description: HNHc Note: nucleases Location: 25032-251 88 bp Feature: gene Location: 25249-25479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WMKC01000162.1 Nocardia seriolae strain PY_31 NODE_185_length_19052_cov_26.339317, whole genome shotgun sequence (19052 bp)
Overview 1 RT 1: 1-1943 bp Neighborhood of RT #1 [1, 1966] RVT-GII COG3393 Feature: gene Location: 1-180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25-145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 5-145 bp Feature: gene Location: 691-996 bp Feature: gene Location: 1322-1966 bp Feature: domain Description: COG3393 Location: 1562-1943 bp Feature: domain Description: COG3393 Location: 1562 -1943 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, COG3393 (Predicted acetyltransferase, GNAT family )

Seq: WMKC01000093.1 Nocardia seriolae strain PY_31 NODE_225_length_13435_cov_28.909567, whole genome shotgun sequence (13435 bp)
Overview 1 RT 1: 6609-9795 bp Neighborhood of RT #1 [6609, 9795] Tra8 Tra8 Tra8 PHA02517 RVT-GII YkfC Feature: gene Location: 6609-7922 bp Feature: domain Description: Tra8 Location: 6762-7023 bp Feature: domain Description: Tra8 Location: 6762-7023 bp Feature: domain Description: Tra8 Location: 7122-7488 bp Feature: domain Description: Tra8 Location: 7122-7488 bp Feature: domain Description: Tra8 Location: 7554-7887 bp Feature: domain Description: Tra8 Location: 7554-7887 bp Feature: gene Location: 8099-8344 bp Feature: domain Description: PHA02517 Location: 8108-8312 bp Feature: domain Description: PHA02517 Location: 8108-83 12 bp Feature: gene Location: 8354-8914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8402-8858 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8402-8858 bp Feature: gene Location: 8911-9279 bp Feature: domain Description: YkfC Location: 9058-9217 bp Feature: domain Description: YkfC Location: 9058-9217 bp Feature: gene Location: 9556-9795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344)

Seq: WMKC01000330.1 Nocardia seriolae strain PY_31 NODE_373_length_1523_cov_115.079019, whole genome shotgun sequence (1523 bp)
Overview 1 RT 1: 2-1271 bp Neighborhood of RT #1 [2, 1429] RVT-GII GIIM Feature: gene Location: 2-1429 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257-965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 257-965 bp Feature: domain Description: GIIM Note: maturase Location: 1040-1271 bp Feature: domain Description: GIIM Note: maturase Location: 104 0-1271 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WMKC01000084.1 Nocardia seriolae strain PY_31 NODE_59_length_50852_cov_30.869618, whole genome shotgun sequence (50852 bp)
Overview 1 RT 1: 1-3691 bp Neighborhood of RT #1 [1, 4359] DDE_5 RVT-GII HTH_31 Feature: gene Location: 1-1377 bp Feature: domain Description: DDE_5 Location: 64-688 bp Feature: domain Description: DDE_5 Location: 64-688 bp Feature: gene Location: 1397-1981 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1655-1952 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165 5 -195 2 bp Feature: gene Location: 1848-3053 bp Feature: gene Location: 3481-4359 bp Feature: domain Description: HTH_31 Location: 3517-3691 bp Feature: domain Description: HTH_31 Location: 35 17-3691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_5 (pfam13546), RVT-GII, HTH_31 (pfam13560)