myRT

myRT report for GCA_009712475.1_ASM971247v1

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Seq: VCJO01000027.1 Micromonospora sp. CP22 NODE_27_length_47237_cov_161.149088, whole genome shotgun sequence (47237 bp)
Overview 1 RT 1: 17368-20924 bp Neighborhood of RT #1 [17368, 20929] DUF4096 DDE_Tnp_1_2 RVT-GII GIIM HTH_ARSR Lsr2 Feature: gene Location: 17368-17727 bp Feature: domain Description: DUF4096 Location: 17401-17629 bp Feature: domain Description: DUF4096 Location: 1 7401 -1 7629 bp Feature: gene Location: 17808-18185 bp Feature: domain Description: DDE_Tnp_1_2 Location: 17922-18147 bp Feature: domain Description: DDE_Tnp_1 _2 Location: 1 7922-1 81 47 bp Feature: gene Location: 18316-19251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 18334-18499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 8334-1 8499 bp Feature: domain Description: GIIM Note: maturase Location: 18550-18784 bp Feature: domain Description: GIIM Note: maturase Location: 1 8550-1 8784 bp Feature: gene Location: 19407-20402 bp Feature: domain Description: HTH_ARSR Location: 19461-19659 bp Feature: domain Description: HTH_ARSR Location: 1 9461 -1 9659 bp Feature: gene Location: 20579-20929 bp Feature: domain Description: Lsr2 Location: 20582-20924 bp Feature: domain Description: Lsr2 Location: 20582-20924 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), DDE_Tnp_1_2 (pfam13586), RVT-GII, GIIM (pfam08388), HTH_ARSR (smart00418), Lsr2 (pfam11774)

Seq: VCJO01000033.1 Micromonospora sp. CP22 NODE_33_length_21237_cov_156.926040, whole genome shotgun sequence (21237 bp)
Overview 1 RT 1: 16500-20521 bp Neighborhood of RT #1 [16500, 20521] PRK06762 RVT-GII GIIM Feature: gene Location: 16500-16697 bp Feature: gene Location: 16950-17180 bp Feature: domain Description: PRK06762 Location: 16956-17079 bp Feature: domain Description: PRK06762 Location: 16956-17079 bp Feature: gene Location: 17351-18808 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17693-18383 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 17693-18383 bp Feature: domain Description: GIIM Note: maturase Location: 18452-18674 bp Feature: domain Description: GIIM Note: maturase Location: 18452 -18674 bp Feature: gene Location: 19367-19663 bp Feature: gene Location: 19961-20521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06762 (hypothetical protein; Provisional), RVT-GII, GIIM (pfam08388)

Seq: VCJO01000009.1 Micromonospora sp. CP22 NODE_9_length_218501_cov_161.881222, whole genome shotgun sequence (218501 bp)
Overview 1 RT 1: 74-6975 bp Neighborhood of RT #1 [74, 7013] DDE_3 COG5659 COG5659 RVT-GII Intron_maturas2 HNHc TesB PRK06247 Feature: gene Location: 74-388 bp Feature: domain Description: DDE_3 Location: 80-236 bp Feature: domain Description: DDE_3 Location: 80-23 6 bp Feature: gene Location: 880-1767 bp Feature: domain Description: COG5659 Location: 886-1189 bp Feature: domain Description: COG5659 Location: 886-1189 bp Feature: domain Description: COG5659 Location: 1366-1576 bp Feature: domain Description: COG5659 Location: 13 66-1576 bp Feature: gene Location: 2352-4130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2613-3408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2613 -3 408 bp Feature: domain Description: Intron_maturas2 Location: 3510-3744 bp Feature: domain Description: Intron_maturas2 Location: 3 510-3 744 bp Feature: domain Description: HNHc Note: nucleases Location: 3924-4089 bp Feature: domain Description: HNHc Note: nucleases Location: 3 924-4089 bp Feature: gene Location: 4687-5568 bp Feature: domain Description: TesB Location: 4717-5554 bp Feature: domain Description: TesB Location: 4717-5554 bp Feature: gene Location: 5565-7013 bp Feature: domain Description: PRK06247 Location: 5571-6975 bp Feature: domain Description: PRK06247 Location: 5571-6975 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_3 (pfam13358), COG5659 (SRSO17 transposase ), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), TesB (COG1946), PRK06247 (pyruvate kinase; Provisional)