myRT

myRT report for GCA_009712515.1_ASM971251v1

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Seq: WMKE01000131.1 Nocardia seriolae strain KH_11 NODE_143_length_25541_cov_8.327003, whole genome shotgun sequence (25541 bp)
Overview 1 RT 1: 22218-25479 bp Neighborhood of RT #1 [22218, 25479] DUF4096 DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 22218-22580 bp Feature: domain Description: DUF4096 Location: 22251-22479 bp Feature: domain Description: DUF4096 Location: 22251 -22479 bp Feature: gene Location: 22655-22990 bp Feature: domain Description: DDE_Tnp_1 Location: 22661-22910 bp Feature: domain Description: DDE_Tnp_1 Location: 22661 -2291 0 bp Feature: gene Location: 23448-25232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23709-24507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23709-24507 bp Feature: domain Description: Intron_maturas2 Location: 24624-24837 bp Feature: domain Description: Intron_maturas2 Location: 24624-24837 bp Feature: domain Description: HNHc Note: nucleases Location: 25032-25188 bp Feature: domain Description: HNHc Note: nucleases Location: 25032-251 88 bp Feature: gene Location: 25249-25479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WMKE01000133.1 Nocardia seriolae strain KH_11 NODE_267_length_13435_cov_8.265396, whole genome shotgun sequence (13435 bp)
Overview 1 RT 1: 6609-9795 bp Neighborhood of RT #1 [6609, 9795] Tra8 Tra8 Tra8 PHA02517 RVT-GII YkfC Feature: gene Location: 6609-7922 bp Feature: domain Description: Tra8 Location: 6762-7023 bp Feature: domain Description: Tra8 Location: 6762 -702 3 bp Feature: domain Description: Tra8 Location: 7122-7488 bp Feature: domain Description: Tra8 Location: 712 2 -7488 bp Feature: domain Description: Tra8 Location: 7554-7887 bp Feature: domain Description: Tra8 Location: 7554-7887 bp Feature: gene Location: 8099-8344 bp Feature: domain Description: PHA02517 Location: 8108-8312 bp Feature: domain Description: PHA02 517 Location: 8108-8312 bp Feature: gene Location: 8354-8914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8402-8852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8402 -8852 bp Feature: gene Location: 8911-9279 bp Feature: domain Description: YkfC Location: 9058-9217 bp Feature: domain Description: YkfC Location: 9058-92 17 bp Feature: gene Location: 9556-9795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra8 (COG2826), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344)

Seq: WMKE01000118.1 Nocardia seriolae strain KH_11 NODE_430_length_4360_cov_7.229965, whole genome shotgun sequence (4360 bp)
Overview 1 RT 1: 3-2917 bp Neighborhood of RT #1 [3, 2917] DDE_5 RVT-GII Feature: gene Location: 3-1241 bp Feature: domain Description: DDE_5 Location: 66-690 bp Feature: domain Description: DDE_5 Location: 66-690 bp Feature: gene Location: 1261-1902 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1576-1873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1576-1873 bp Feature: gene Location: 2028-2177 bp Feature: gene Location: 2237-2917 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_5 (pfam13546)