myRT

myRT report for GCA_009712525.1_ASM971252v1

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Seq: WMKD01000154.1 Nocardia seriolae strain PY_37 NODE_140_length_25541_cov_7.645021, whole genome shotgun sequence (25541 bp)
Overview 1 RT 1: 22218-25479 bp Neighborhood of RT #1 [22218, 25479] DUF4096 DDE_Tnp_1 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 22218-22580 bp Feature: domain Description: DUF4096 Location: 22251-22479 bp Feature: domain Description: DUF4096 Location: 22251 -22479 bp Feature: gene Location: 22655-22990 bp Feature: domain Description: DDE_Tnp_1 Location: 22661-22910 bp Feature: domain Description: DDE_Tnp_1 Location: 22661 -2291 0 bp Feature: gene Location: 23448-25232 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23709-24507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23709-24507 bp Feature: domain Description: Intron_maturas2 Location: 24624-24837 bp Feature: domain Description: Intron_maturas2 Location: 24624-24837 bp Feature: domain Description: HNHc Note: nucleases Location: 25032-25188 bp Feature: domain Description: HNHc Note: nucleases Location: 25032-251 88 bp Feature: gene Location: 25249-25479 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4096 (pfam13340), DDE_Tnp_1 (pfam01609), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: WMKD01000155.1 Nocardia seriolae strain PY_37 NODE_287_length_13896_cov_23.225706, whole genome shotgun sequence (13896 bp)
Overview 1 RT 1: 7662-9795 bp Neighborhood of RT #1 [7662, 9795] HTH_23 HTH_38 PHA02517 RVT-GII YkfC Feature: gene Location: 7662-7922 bp Feature: domain Description: HTH_23 Location: 7689-7767 bp Feature: domain Description: HTH_2 3 Location: 7689-7767 bp Feature: domain Description: HTH_38 Location: 7806-7920 bp Feature: domain Description: HTH_38 Location: 7806-792 0 bp Feature: gene Location: 8099-8344 bp Feature: domain Description: PHA02517 Location: 8108-8312 bp Feature: domain Description: PHA02 517 Location: 8108-8312 bp Feature: gene Location: 8354-8914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8402-8852 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8402 -8852 bp Feature: gene Location: 8911-9279 bp Feature: domain Description: YkfC Location: 9058-9217 bp Feature: domain Description: YkfC Location: 9058-92 17 bp Feature: gene Location: 9556-9795 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_23 (pfam13384), HTH_38 (pfam13936), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, YkfC (COG3344)

Seq: WMKD01000137.1 Nocardia seriolae strain PY_37 NODE_630_length_4009_cov_6.638847, whole genome shotgun sequence (4009 bp)
Overview 1 RT 1: 2-2916 bp Neighborhood of RT #1 [2, 2916] DDE_5 RVT-GII Feature: gene Location: 2-1240 bp Feature: domain Description: DDE_5 Location: 65-689 bp Feature: domain Description: DDE_5 Location: 65-689 bp Feature: gene Location: 1260-1901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1575-1872 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1575-1872 bp Feature: gene Location: 2027-2176 bp Feature: gene Location: 2236-2916 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_5 (pfam13546)