myRT

myRT report for GCA_009712575.1_ASM971257v1

Download annotations/find similar RTs

Seq: WMKB01000292.1 Nocardia seriolae strain VT_45 Contig_116, whole genome shotgun sequence (25651 bp)
Overview 1 RT 1: 115-3275 bp Neighborhood of RT #1 [115, 3376] RVT-GII Intron_maturas2 HNHc DDE_Tnp_1 DUF4096 Feature: gene Location: 115-345 bp Feature: gene Location: 362-2146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623-1421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 623-1 421 bp Feature: domain Description: Intron_maturas2 Location: 1538-1751 bp Feature: domain Description: Intron_maturas2 Location: 1 538-1 751 bp Feature: domain Description: HNHc Note: nucleases Location: 1946-2102 bp Feature: domain Description: HNHc Note: nucleases Location: 1 946-21 02 bp Feature: gene Location: 2604-2939 bp Feature: domain Description: DDE_Tnp_1 Location: 2610-2859 bp Feature: domain Description: DDE_Tnp_1 Location: 261 0-2859 bp Feature: gene Location: 3014-3376 bp Feature: domain Description: DUF4096 Location: 3047-3275 bp Feature: domain Description: DUF4096 Location: 3047-3275 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), DDE_Tnp_1 (pfam01609), DUF4096 (pfam13340)

Seq: WMKB01000312.1 Nocardia seriolae strain VT_45 Contig_144, whole genome shotgun sequence (19596 bp)
Overview 1 RT 1: 1-6050 bp Neighborhood of RT #1 [1, 6050] RVT-GII RVT-GII GIIM HTH_31 Feature: gene Location: 1-195 bp Feature: gene Location: 327-1229 bp Feature: gene Location: 1359-3212 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1617-1971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1617-1971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2040-2748 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 040-2 748 bp Feature: domain Description: GIIM Note: maturase Location: 2823-3054 bp Feature: domain Description: GIIM Note: maturase Location: 2 82 3-3054 bp Feature: gene Location: 4104-5312 bp Feature: domain Description: HTH_31 Location: 4125-4305 bp Feature: domain Description: HTH_31 Location: 412 5-4305 bp Feature: gene Location: 5916-6050 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_31 (pfam13560)

Seq: WMKB01000290.1 Nocardia seriolae strain VT_45 Contig_165, whole genome shotgun sequence (16861 bp)
Overview 1 RT 1: 6414-9565 bp Neighborhood of RT #1 [6414, 9600] YkfC RVT-GII PHA02517 Tra8 Tra8 Tra8 Feature: gene Location: 6414-6653 bp Feature: gene Location: 6930-7298 bp Feature: domain Description: YkfC Location: 7077-7236 bp Feature: domain Description: YkfC Location: 7077-723 6 bp Feature: gene Location: 7295-7855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7343-7793 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 43 -7793 bp Feature: gene Location: 7865-8110 bp Feature: domain Description: PHA02517 Location: 7874-8078 bp Feature: domain Description: PHA02517 Location: 7874-8078 bp Feature: gene Location: 8287-9600 bp Feature: domain Description: Tra8 Location: 8440-8701 bp Feature: domain Description: Tra8 Location: 8440-8701 bp Feature: domain Description: Tra8 Location: 8800-9166 bp Feature: domain Description: Tra8 Location: 8800-9166 bp Feature: domain Description: Tra8 Location: 9232-9565 bp Feature: domain Description: Tra8 Location: 923 2-9565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkfC (COG3344), RVT-GII, PHA02517 (putative transposase OrfB; Reviewed), Tra8 (COG2826)

Seq: WMKB01000075.1 Nocardia seriolae strain VT_45 Contig_271, whole genome shotgun sequence (6797 bp)
Overview 1 RT 1: 3-2337 bp Neighborhood of RT #1 [3, 2351] RVT-GII GIIM CaiA Feature: gene Location: 3-653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12-189 bp Feature: domain Description: GIIM Note: maturase Location: 264-495 bp Feature: domain Description: GIIM Note: maturase Location: 264 -4 95 bp Feature: gene Location: 757-954 bp Feature: gene Location: 1113-2351 bp Feature: domain Description: CaiA Location: 1131-2337 bp Feature: domain Description: CaiA Location: 1131-2337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), CaiA (COG1960)

Seq: WMKB01000305.1 Nocardia seriolae strain VT_45 Contig_290, whole genome shotgun sequence (5295 bp)
Overview 1 RT 1: 1552-5265 bp Neighborhood of RT #1 [1552, 5294] RVT-GII DDE_5 DDE_5 Feature: gene Location: 1552-2232 bp Feature: gene Location: 2292-2510 bp Feature: gene Location: 2624-3208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2882-3179 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2882-3179 bp Feature: gene Location: 3228-5294 bp Feature: domain Description: DDE_5 Location: 3294-3915 bp Feature: domain Description: DDE_5 Location: 3294-3915 bp Feature: domain Description: DDE_5 Location: 4659-5265 bp Feature: domain Description: DDE_5 Location: 465 9-5 265 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, DDE_5 (pfam13546)

Seq: WMKB01000002.1 Nocardia seriolae strain VT_45 Contig_317, whole genome shotgun sequence (3776 bp)
Overview 1 RT 1: 3-2418 bp Neighborhood of RT #1 [3, 2546] RVT-GII GIIM HTH_29 HTH_50 DDE_3 Feature: gene Location: 3-743 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 69-279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 9-279 bp Feature: domain Description: GIIM Note: maturase Location: 354-585 bp Feature: domain Description: GIIM Note: maturase Location: 354-585 bp Feature: gene Location: 921-1451 bp Feature: gene Location: 1461-2546 bp Feature: domain Description: HTH_29 Location: 1569-1743 bp Feature: domain Description: HTH_29 Location: 156 9-1743 bp Feature: domain Description: HTH_50 Location: 1791-1872 bp Feature: domain Description: HTH_50 Location: 1791-1872 bp Feature: domain Description: DDE_3 Location: 1980-2418 bp Feature: domain Description: DDE_3 Location: 1980-2418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), HTH_29 (pfam13551), HTH_50 (pfam18024), DDE_3 (pfam13358)