myRT

myRT report for GCA_009718215.1_ASM971821v1

Download annotations/find similar RTs

Seq: WNAA01000014.1 [Ruminococcus] torques strain BIOML-A5 scaffold14_size150781, whole genome shotgun sequence (150879 bp)
Overview 1 RT 1: 139517-144090 bp Neighborhood of RT #1 [139517, 144090] DUF3801 VirD4 RVT-GII Feature: gene Location: 139517-140080 bp Feature: domain Description: DUF3801 Location: 139709-140060 bp Feature: domain Description: DUF3801 Location: 1 39709-1 40060 bp Feature: gene Location: 140080-140880 bp Feature: domain Description: VirD4 Location: 140332-140842 bp Feature: domain Description: VirD4 Location: 1 40332-1 40842 bp Feature: gene Location: 141539-141964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141869-141920 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 869-1 41 920 bp Feature: gene Location: 142008-142787 bp Feature: gene Location: 142807-144090 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII

Seq: WNAA01000022.1 [Ruminococcus] torques strain BIOML-A5 scaffold22_size43789, whole genome shotgun sequence (43789 bp)
Overview 1 RT 1: 33534-38009 bp Neighborhood of RT #1 [33534, 38011] RVT-GII Gph PRK05755 Feature: gene Location: 33534-33713 bp Feature: gene Location: 33915-34058 bp Feature: gene Location: 34045-34500 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 34255-34375 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 55-34375 bp Feature: gene Location: 34662-35306 bp Feature: domain Description: Gph Location: 34695-35295 bp Feature: domain Description: Gph Location: 34695-352 95 bp Feature: gene Location: 35396-38011 bp Feature: domain Description: PRK05755 Location: 35405-38009 bp Feature: domain Description: PRK05755 Location: 35405-38009 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Gph (COG0546), PRK05755 (DNA polymerase I; Provisional)

Seq: WNAA01000002.1 [Ruminococcus] torques strain BIOML-A5 scaffold2_size160516, whole genome shotgun sequence (160413 bp)
Overview 1 RT 1: 4526-8498 bp 2 RT 2: 37618-40293 bp Neighborhood of RT #1 [4526, 8530] RVT-DGRs Phage_portal YmfN Neighborhood of RT #2 [37618, 40298] Phage_holin_5_2 RVT-DGRs Phage_XkdX Feature: gene Location: 4526-4759 bp Feature: gene Location: 4810-5124 bp Feature: gene Location: 5196-5987 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5202-5760 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5202-5760 bp Feature: gene Location: 6004-6864 bp Feature: domain Description: Phage_portal Location: 6142-6784 bp Feature: domain Description: Phage_portal Location: 6142-6784 bp Feature: gene Location: 6959-8530 bp Feature: domain Description: YmfN Location: 6989-8498 bp Feature: domain Description: YmfN Location: 6989-8498 bp Feature: gene Location: 37618-37911 bp Feature: domain Description: Phage_holin_5_2 Location: 37663-37894 bp Feature: domain Description: Phage_holin_5_2 Location: 3 7663 -3 7894 bp Feature: gene Location: 37924-38247 bp Feature: gene Location: 38266-39462 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 38461-39184 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3 8461-3 9184 bp Feature: gene Location: 39673-40158 bp Feature: gene Location: 40155-40298 bp Feature: domain Description: Phage_XkdX Location: 40176-40293 bp Feature: domain Description: Phage_XkdX Location: 40176-40293 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, Phage_portal (pfam04860), YmfN (COG4626), Phage_holin_5_2 (pfam16079), Phage_XkdX (pfam09693)

Seq: WNAA01000032.1 [Ruminococcus] torques strain BIOML-A5 scaffold32_size23876, whole genome shotgun sequence (23876 bp)
Overview 1 RT 1: 12282-19078 bp Neighborhood of RT #1 [12282, 19101] RVT-GII Peptidase_M56 YbxI Penicillinase_R Feature: gene Location: 12282-13304 bp Feature: gene Location: 13361-14872 bp Feature: gene Location: 15143-16915 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15671-16058 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 15671-16058 bp Feature: gene Location: 16917-18713 bp Feature: domain Description: Peptidase_M56 Location: 16947-17844 bp Feature: domain Description: Peptidase_M56 Location: 1694 7-1784 4 bp Feature: domain Description: YbxI Location: 17967-18702 bp Feature: domain Description: YbxI Location: 17967-18702 bp Feature: gene Location: 18715-19101 bp Feature: domain Description: Penicillinase_R Location: 18736-19078 bp Feature: domain Description: Penicillinase_R Location: 18736-19078 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Peptidase_M56 (pfam05569), YbxI (COG2602), Penicillinase_R (pfam03965)

Seq: WNAA01000059.1 [Ruminococcus] torques strain BIOML-A5 scaffold59_size5237, whole genome shotgun sequence (5237 bp)
Overview 1 RT 1: 585-4517 bp Neighborhood of RT #1 [585, 4972] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 FlgJ Feature: gene Location: 585-1679 bp Feature: domain Description: PHA00653 Location: 678-1677 bp Feature: domain Description: PHA0065 3 Location: 678-1677 bp Feature: gene Location: 1739-2128 bp Feature: domain Description: Avd_like Location: 1799-2102 bp Feature: domain Description: Avd_like Location: 1799-2102 bp Feature: gene Location: 2484-3524 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2694-3309 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2694-3309 bp Feature: gene Location: 3596-4024 bp Feature: domain Description: Phage_holin_4_1 Location: 3650-3977 bp Feature: domain Description: Phage_holin_4_1 Location: 365 0-3977 bp Feature: gene Location: 4028-4972 bp Feature: domain Description: FlgJ Location: 4046-4517 bp Feature: domain Description: FlgJ Location: 4046-45 17 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105), FlgJ (COG1705), PHA00653 (mtd;major tropism determinant)

Seq: WNAA01000005.1 [Ruminococcus] torques strain BIOML-A5 scaffold5_size120847, whole genome shotgun sequence (120847 bp)
Overview 1 RT 1: 20736-25220 bp 2 RT 2: 58454-73073 bp Neighborhood of RT #1 [20736, 25220] DUF3801 VirD4 VirD4 RVT-GII Neighborhood of RT #2 [58454, 73501] YtxK COG4646 RVT-GII Intron_maturas2 HNHc A_NRPS_TlmIV_like PRK12316 A_NRPS_TlmIV_like Methyltransf_12 PRK12467 Feature: gene Location: 20736-21227 bp Feature: domain Description: DUF3801 Location: 20802-21195 bp Feature: domain Description: DUF3801 Location: 20802-21195 bp Feature: gene Location: 21224-22153 bp Feature: domain Description: VirD4 Location: 21491-21845 bp Feature: domain Description: VirD4 Location: 21491-21845 bp Feature: domain Description: VirD4 Location: 21935-22091 bp Feature: domain Description: VirD4 Location: 21935-22091 bp Feature: gene Location: 22779-24689 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23109-23853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 23109-23853 bp Feature: gene Location: 24713-24868 bp Feature: gene Location: 24966-25220 bp Feature: gene Location: 58454-65149 bp Feature: domain Description: YtxK Location: 61259-62120 bp Feature: domain Description: YtxK Location: 6 1259-6 2120 bp Feature: domain Description: COG4646 Location: 62180-64745 bp Feature: domain Description: COG46 46 Location: 6 2180-6 4745 bp Feature: gene Location: 65272-65466 bp Feature: gene Location: 65699-67513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 65963-66785 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6 596 3-6 6 785 bp Feature: domain Description: Intron_maturas2 Location: 66857-67289 bp Feature: domain Description: Intron_maturas2 Location: 6 6 857-6 7289 bp Feature: domain Description: HNHc Note: nucleases Location: 67340-67484 bp Feature: domain Description: HNHc Note: nucleases Location: 6 7340-6 7484 bp Feature: gene Location: 67869-68021 bp Feature: domain Description: A_NRPS_TlmIV_like Location: 67872-68016 bp Feature: domain Description: A_NRPS_TlmIV_like Location: 6 7872-6 8016 bp Feature: gene Location: 68072-73501 bp Feature: domain Description: PRK12316 Location: 68285-69113 bp Feature: domain Description: PRK12316 Location: 6 8285-6 9113 bp Feature: domain Description: A_NRPS_TlmIV_like Location: 69596-70946 bp Feature: domain Description: A_NRPS_TlmIV_like Location: 6 9596 -70946 bp Feature: domain Description: Methyltransf_12 Location: 71513-71813 bp Feature: domain Description: Methyltransf_12 Location: 71513-71813 bp Feature: domain Description: PRK12467 Location: 72068-73073 bp Feature: domain Description: PRK1246 7 Location: 7206 8-73073 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3801 (pfam12687), VirD4 (COG3505), RVT-GII, YtxK (COG0827), COG4646 (Adenine-specific DNA methylase, N12 class ), Intron_maturas2 (pfam01348), HNHc (smart00507), A_NRPS_TlmIV_like (cd12114), PRK12316 (peptide synthase; Provisional), Methyltransf_12 (pfam08242)
PRK12467 (peptide synthase; Provisional)

Seq: WNAA01000009.1 [Ruminococcus] torques strain BIOML-A5 scaffold9_size84705, whole genome shotgun sequence (84705 bp)
Overview 1 RT 1: 49641-52854 bp Neighborhood of RT #1 [49641, 52854] DnaD RVT-DGRs Avd_like Feature: gene Location: 49641-49877 bp Feature: gene Location: 50090-50596 bp Feature: domain Description: DnaD Location: 50180-50510 bp Feature: domain Description: DnaD Location: 50180-50510 bp Feature: gene Location: 50640-51710 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50880-51483 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 50880-51483 bp Feature: gene Location: 51865-52236 bp Feature: domain Description: Avd_like Location: 51916-52222 bp Feature: domain Description: Avd_like Location: 51916-52222 bp Feature: gene Location: 52237-52854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaD (COG3935), RVT-DGRs, Avd_like (cd16376)