myRT

myRT report for GCA_009718255.1_ASM971825v1

Download annotations/find similar RTs

Seq: WNAD01000010.1 [Ruminococcus] torques strain BIOML-A2 scaffold10_size84998, whole genome shotgun sequence (84998 bp)
Overview 1 RT 1: 52493-55053 bp Neighborhood of RT #1 [52493, 55205] DnaD RVT-DGRs Avd_like GIY-YIG_SF Feature: gene Location: 52493-52624 bp Feature: gene Location: 52733-53239 bp Feature: domain Description: DnaD Location: 52823-53153 bp Feature: domain Description: DnaD Location: 52823-531 53 bp Feature: gene Location: 53283-54353 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53523-54126 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 53523-541 26 bp Feature: gene Location: 54508-54678 bp Feature: domain Description: Avd_like Location: 54514-54664 bp Feature: domain Description: Avd_like Location: 5451 4-54664 bp Feature: gene Location: 54723-55205 bp Feature: domain Description: GIY-YIG_SF Location: 54819-55053 bp Feature: domain Description: GIY-YIG_SF Location: 5481 9-55053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaD (COG3935), RVT-DGRs, Avd_like (cd16376), GIY-YIG_SF (cl15257)

Seq: WNAD01000021.1 [Ruminococcus] torques strain BIOML-A2 scaffold21_size43678, whole genome shotgun sequence (43678 bp)
Overview 1 RT 1: 5779-10256 bp Neighborhood of RT #1 [5779, 10256] PRK05755 Gph RVT-GII Feature: gene Location: 5779-8394 bp Feature: domain Description: PRK05755 Location: 5788-8392 bp Feature: domain Description: PRK05755 Location: 5788-8392 bp Feature: gene Location: 8484-9128 bp Feature: domain Description: Gph Location: 8517-9117 bp Feature: domain Description: Gph Location: 8517-9117 bp Feature: gene Location: 9290-9745 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9500-9620 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9500-962 0 bp Feature: gene Location: 9732-9875 bp Feature: gene Location: 10077-10256 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05755 (DNA polymerase I; Provisional), Gph (COG0546), RVT-GII

Seq: WNAD01000003.1 [Ruminococcus] torques strain BIOML-A2 scaffold3_size166481, whole genome shotgun sequence (166481 bp)
Overview 1 RT 1: 71046-74978 bp Neighborhood of RT #1 [71046, 75433] PHA00653 Avd_like RVT-DGRs Phage_holin_4_1 FlgJ Feature: gene Location: 71046-72140 bp Feature: domain Description: PHA00653 Location: 71139-72138 bp Feature: domain Description: PHA00653 Location: 7113 9-7213 8 bp Feature: gene Location: 72200-72589 bp Feature: domain Description: Avd_like Location: 72260-72563 bp Feature: domain Description: Avd_like Location: 72260-72563 bp Feature: gene Location: 72945-73985 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 73155-73770 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 73 155-73 770 bp Feature: gene Location: 74057-74485 bp Feature: domain Description: Phage_holin_4_1 Location: 74111-74438 bp Feature: domain Description: Phage_holin_4_1 Location: 74111-7443 8 bp Feature: gene Location: 74489-75433 bp Feature: domain Description: FlgJ Location: 74507-74978 bp Feature: domain Description: FlgJ Location: 74507-74978 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA00653 (mtd;major tropism determinant), Avd_like (cd16376), RVT-DGRs, Phage_holin_4_1 (pfam05105), FlgJ (COG1705)

Seq: WNAD01000004.1 [Ruminococcus] torques strain BIOML-A2 scaffold4_size135011, whole genome shotgun sequence (135011 bp)
Overview 1 RT 1: 21830-24505 bp Neighborhood of RT #1 [21830, 24510] Phage_holin_5_2 RVT-DGRs Phage_XkdX Feature: gene Location: 21830-22123 bp Feature: domain Description: Phage_holin_5_2 Location: 21875-22106 bp Feature: domain Description: Phage_holin_5_2 Location: 21875-22106 bp Feature: gene Location: 22136-22459 bp Feature: gene Location: 22478-23674 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22673-23396 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 22673-23396 bp Feature: gene Location: 23885-24370 bp Feature: gene Location: 24367-24510 bp Feature: domain Description: Phage_XkdX Location: 24388-24505 bp Feature: domain Description: Phage_XkdX Location: 24 388-24 505 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_5_2 (pfam16079), RVT-DGRs, Phage_XkdX (pfam09693)

Seq: WNAD01000059.1 [Ruminococcus] torques strain BIOML-A2 scaffold59_size8419, whole genome shotgun sequence (8419 bp)
Overview 1 RT 1: 6442-7937 bp Neighborhood of RT #1 [6442, 8164] RVT-DGRs Feature: gene Location: 6442-6675 bp Feature: gene Location: 6726-7040 bp Feature: gene Location: 7112-8164 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7322-7937 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 7322-7937 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs