myRT

myRT report for GCA_009718425.1_ASM971842v1

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Seq: WNAL01000102.1 Roseburia faecis strain BIOML-A1 scaffold102_size2091, whole genome shotgun sequence (2091 bp)
Overview 1 RT 1: 2-2041 bp Neighborhood of RT #1 [2, 2041] RVT-GII RpoE Feature: gene Location: 2-127 bp Feature: gene Location: 219-611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 510-588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 0-588 bp Feature: gene Location: 733-1278 bp Feature: domain Description: RpoE Location: 781-1264 bp Feature: domain Description: RpoE Location: 781 -1 264 bp Feature: gene Location: 1265-2041 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, RpoE (COG3343)

Seq: WNAL01000104.1 Roseburia faecis strain BIOML-A1 scaffold104_size1881, whole genome shotgun sequence (1881 bp)
Overview 1 RT 1: 3-1717 bp Neighborhood of RT #1 [3, 1788] RVT-GII GIIM Feature: gene Location: 3-224 bp Feature: gene Location: 266-439 bp Feature: gene Location: 490-1788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1438 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 745-1438 bp Feature: domain Description: GIIM Note: maturase Location: 1498-1717 bp Feature: domain Description: GIIM Note: maturase Location: 1498-1717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WNAL01000105.1 Roseburia faecis strain BIOML-A1 scaffold105_size1876, whole genome shotgun sequence (1876 bp)
Overview 1 RT 1: 92-1722 bp Neighborhood of RT #1 [92, 1722] RVT-GII Feature: gene Location: 92-1387 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-1037 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 47-103 7 bp Feature: gene Location: 1477-1722 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII

Seq: WNAL01000021.1 Roseburia faecis strain BIOML-A1 scaffold21_size65034, whole genome shotgun sequence (65034 bp)
Overview 1 RT 1: 46726-51622 bp Neighborhood of RT #1 [46726, 51622] Tar PBP1_BmpA_Med_like RVT-GII GIIM Feature: gene Location: 46726-48426 bp Feature: domain Description: Tar Location: 47215-48421 bp Feature: domain Description: Tar Location: 4 7215-4 84 21 bp Feature: gene Location: 48436-49617 bp Feature: domain Description: PBP1_BmpA_Med_like Location: 48628-49405 bp Feature: domain Description: PBP1_BmpA_Med_like Location: 4 8628-4 94 05 bp Feature: gene Location: 49871-50791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49877-50342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4 9877-5034 2 bp Feature: domain Description: GIIM Note: maturase Location: 50396-50615 bp Feature: domain Description: GIIM Note: maturase Location: 50396-50615 bp Feature: gene Location: 50849-51103 bp Feature: gene Location: 51419-51622 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tar (COG0840), PBP1_BmpA_Med_like, RVT-GII, GIIM (pfam08388)

Seq: WNAL01000004.1 Roseburia faecis strain BIOML-A1 scaffold4_size126030, whole genome shotgun sequence (126030 bp)
Overview 1 RT 1: 122192-126029 bp Neighborhood of RT #1 [122192, 126029] BID_2 SLAP_DUP TcdA RVT-GII GIIM Feature: gene Location: 122192-123274 bp Feature: domain Description: BID_2 Location: 122702-122894 bp Feature: domain Description: BID_2 Location: 122702-122894 bp Feature: domain Description: SLAP_DUP Location: 122960-123239 bp Feature: domain Description: SLAP_DUP Location: 122960-123239 bp Feature: gene Location: 123296-124054 bp Feature: domain Description: TcdA Location: 123305-124049 bp Feature: domain Description: TcdA Location: 123305 -124049 bp Feature: gene Location: 124220-125524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124421-125039 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124421-125 039 bp Feature: domain Description: GIIM Note: maturase Location: 125093-125309 bp Feature: domain Description: GIIM Note: maturase Location: 125 093-125 309 bp Feature: gene Location: 125880-126029 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT BID_2 (smart00635), SLAP_DUP (TIGR04398), TcdA (COG1179), RVT-GII, GIIM (pfam08388)

Seq: WNAL01000060.1 Roseburia faecis strain BIOML-A1 scaffold60_size9214, whole genome shotgun sequence (9214 bp)
Overview 1 RT 1: 2-5344 bp Neighborhood of RT #1 [2, 5344] RVT-GII AAA-ATPase_like PDDEXK_9 Feature: gene Location: 2-1981 bp Feature: gene Location: 2260-2871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2518-2860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2518-286 0 bp Feature: gene Location: 3106-4809 bp Feature: domain Description: AAA-ATPase_like Location: 3130-4018 bp Feature: domain Description: AAA-ATPase_like Location: 3130-4018 bp Feature: domain Description: PDDEXK_9 Location: 4492-4798 bp Feature: domain Description: PDDEXK_9 Location: 4492-4798 bp Feature: gene Location: 5030-5344 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011)

Seq: WNAL01000069.1 Roseburia faecis strain BIOML-A1 scaffold69_size6716, whole genome shotgun sequence (6716 bp)
Overview 1 RT 1: 2-6188 bp Neighborhood of RT #1 [2, 6202] RVT-GII GIIM AAA-ATPase_like PDDEXK_9 Feature: gene Location: 2-2068 bp Feature: gene Location: 2571-3965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2889-3513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2889-3513 bp Feature: domain Description: GIIM Note: maturase Location: 3570-3774 bp Feature: domain Description: GIIM Note: maturase Location: 357 0-37 7 4 bp Feature: gene Location: 4204-4362 bp Feature: gene Location: 4475-6202 bp Feature: domain Description: AAA-ATPase_like Location: 4523-5411 bp Feature: domain Description: AAA-ATPase_like Location: 4523-5411 bp Feature: domain Description: PDDEXK_9 Location: 5885-6188 bp Feature: domain Description: PDDEXK_9 Location: 5885-6188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), AAA-ATPase_like (pfam09820), PDDEXK_9 (pfam08011)