myRT

myRT report for GCA_009725015.1_ULIV_Paeru4068_1.0

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Seq: WOFT01000001.1 Pseudomonas aeruginosa strain 4068 4068-unitig_9, whole genome shotgun sequence (5723207 bp)
Overview 1 RT 1: 2003973-2014264 bp Neighborhood of RT #1 [2003973, 2014266] HTH_XRE int RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 2003973-2004497 bp Feature: domain Description: HTH_XRE Location: 2004279-2004393 bp Feature: domain Description: HTH_XRE Location: 2004279-2004393 bp Feature: gene Location: 2004502-2005686 bp Feature: domain Description: int Location: 2004505-2005522 bp Feature: domain Description: int Location: 2004505-2005522 bp Feature: gene Location: 2005803-2007488 bp Feature: RT Description: RVT_N Location: 2005860-2006100 bp Feature: RT Description: RVT_N Location: 2005860-20061 00 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2006148-2006784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20061 48-2006784 bp Feature: domain Description: GIIM Note: maturase Location: 2006838-2007069 bp Feature: domain Description: GIIM Note: maturase Location: 2006838-2007069 bp Feature: domain Description: HNH Note: nucleases Location: 2007321-2007459 bp Feature: domain Description: HNH Note: nucleases Location: 2007321 -2007459 bp Feature: gene Location: 2008569-2012306 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2008677-2009334 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 2008677-2009334 bp Feature: domain Description: PRK09776 Location: 2009547-2010018 bp Feature: domain Description: PRK09776 Location: 2009547-201 001 8 bp Feature: domain Description: PAS Location: 2010090-2010600 bp Feature: domain Description: PAS Location: 201 0090-201 0600 bp Feature: domain Description: PRK10060 Location: 2010609-2012256 bp Feature: domain Description: PRK1 0060 Location: 201 0609-201 2256 bp Feature: gene Location: 2012413-2014266 bp Feature: domain Description: PRK05658 Location: 2012425-2014264 bp Feature: domain Description: PRK05658 Location: 201 2425-201 4264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), int (PHA02601), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)