myRT

myRT report for GCA_009727125.1_ASM972712v1

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Seq: WOAF01000028.1 Pseudomonas aeruginosa strain PA219 NODE_28_length_90066_cov_25.528403, whole genome shotgun sequence (90066 bp)
Overview 1 RT 1: 31497-39459 bp Neighborhood of RT #1 [31497, 39467] RpmB rpmG RVT_N RVT-GII YkfC HNHc RVT_N RVT-GII YkfC HNHc COG3450 PRK13360 Feature: gene Location: 31497-31733 bp Feature: domain Description: RpmB Location: 31500-31722 bp Feature: domain Description: RpmB Location: 31 500-31 722 bp Feature: gene Location: 31745-31900 bp Feature: domain Description: rpmG Location: 31748-31892 bp Feature: domain Description: rpmG Location: 31 748-31 892 bp Feature: gene Location: 32962-34659 bp Feature: RT Description: RVT_N Location: 33019-33262 bp Feature: RT Description: RVT_N Location: 3301 9-33262 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33307-33943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33307-33943 bp Feature: domain Description: YkfC Location: 34165-34300 bp Feature: domain Description: YkfC Location: 341 65-34300 bp Feature: domain Description: HNHc Note: nucleases Location: 34447-34612 bp Feature: domain Description: HNHc Note: nucleases Location: 34447-3461 2 bp Feature: gene Location: 35799-37496 bp Feature: RT Description: RVT_N Location: 35856-36099 bp Feature: RT Description: RVT_N Location: 35856-36099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 36144-36780 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 44-36780 bp Feature: domain Description: YkfC Location: 37002-37137 bp Feature: domain Description: YkfC Location: 37002-371 37 bp Feature: domain Description: HNHc Note: nucleases Location: 37284-37449 bp Feature: domain Description: HNHc Note: nucleases Location: 37284-37449 bp Feature: gene Location: 37711-38073 bp Feature: domain Description: COG3450 Location: 37714-38059 bp Feature: domain Description: COG3450 Location: 3771 4-38059 bp Feature: gene Location: 38139-39467 bp Feature: domain Description: PRK13360 Location: 38145-39459 bp Feature: domain Description: PRK1 3360 Location: 381 45-39459 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RpmB (COG0227), rpmG (PRK00595), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507), COG3450 (Predicted enzyme of the cupin superfamily ), PRK13360 (omega amino acid--pyruvate transaminase; Provisional)

Seq: WOAF01000004.1 Pseudomonas aeruginosa strain PA219 NODE_4_length_384168_cov_22.600584, whole genome shotgun sequence (384168 bp)
Overview 1 RT 1: 290179-300487 bp Neighborhood of RT #1 [290179, 300489] COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 290179-291300 bp Feature: domain Description: COG3177 Location: 290197-291289 bp Feature: domain Description: COG3177 Location: 2 90197-2 912 89 bp Feature: gene Location: 291562-291723 bp Feature: gene Location: 292026-293711 bp Feature: RT Description: RVT_N Location: 292083-292323 bp Feature: RT Description: RVT_N Location: 2 92 083-2 92 32 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 292371-293007 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 92 371-2 93007 bp Feature: domain Description: GIIM Note: maturase Location: 293061-293292 bp Feature: domain Description: GIIM Note: maturase Location: 2 93061-2 932 92 bp Feature: domain Description: HNH Note: nucleases Location: 293544-293682 bp Feature: domain Description: HNH Note: nucleases Location: 2 93544-2 93682 bp Feature: gene Location: 294792-298529 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 294900-295557 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 94900-2 95557 bp Feature: domain Description: PRK09776 Location: 295770-296241 bp Feature: domain Description: PRK09776 Location: 2 95770-2 962 41 bp Feature: domain Description: PAS Location: 296286-296823 bp Feature: domain Description: PAS Location: 2 962 86-2 9682 3 bp Feature: domain Description: PRK10060 Location: 296832-298479 bp Feature: domain Description: PRK10060 Location: 2 96832 -2 98479 bp Feature: gene Location: 298636-300489 bp Feature: domain Description: PRK05658 Location: 298648-300487 bp Feature: domain Description: PRK05658 Location: 2 98648-300487 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: WOAF01000097.1 Pseudomonas aeruginosa strain PA219 NODE_97_length_1852_cov_45.845797, whole genome shotgun sequence (1852 bp)
Overview 1 RT 1: 2-1690 bp Neighborhood of RT #1 [2, 1788] RVT-GII GIIM Feature: gene Location: 2-169 bp Feature: gene Location: 520-1788 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733-1390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 73 3 -13 90 bp Feature: domain Description: GIIM Note: maturase Location: 1468-1690 bp Feature: domain Description: GIIM Note: maturase Location: 1468-1690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)