myRT

myRT report for GCA_009727405.1_ASM972740v1

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Seq: WOAR01000104.1 Pseudomonas aeruginosa strain PA176 NODE_104_length_750_cov_1.012841, whole genome shotgun sequence (750 bp)
Overview 1 RT 1: 2-646 bp Neighborhood of RT #1 [2, 646] RVT_N RVT-GII Feature: gene Location: 2-415 bp Feature: RT Description: RVT_N Location: 59-296 bp Feature: RT Description: RVT_N Location: 59-296 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-416 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 347-41 6 bp Feature: gene Location: 470-646 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: WOAR01000002.1 Pseudomonas aeruginosa strain PA176 NODE_2_length_612508_cov_23.964761, whole genome shotgun sequence (612508 bp)
Overview 1 RT 1: 5311-9690 bp Neighborhood of RT #1 [5311, 9690] ABC_phnC DUF772 RVT-GII GIIM Feature: gene Location: 5311-6138 bp Feature: domain Description: ABC_phnC Location: 5341-6055 bp Feature: domain Description: ABC_phnC Location: 5341-6055 bp Feature: gene Location: 6481-7122 bp Feature: domain Description: DUF772 Location: 6631-6826 bp Feature: domain Description: DUF772 Location: 6631-682 6 bp Feature: gene Location: 7511-8779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7724-8381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772 4-8381 bp Feature: domain Description: GIIM Note: maturase Location: 8459-8681 bp Feature: domain Description: GIIM Note: maturase Location: 8459-8681 bp Feature: gene Location: 8929-9327 bp Feature: gene Location: 9511-9690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388)

Seq: WOAR01000003.1 Pseudomonas aeruginosa strain PA176 NODE_3_length_577965_cov_20.967107, whole genome shotgun sequence (577965 bp)
Overview 1 RT 1: 86043-103587 bp Neighborhood of RT #1 [86043, 103694] LC_FACS_bac Inovirus_Gp2 RVT-GII TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C nitrilases_CHs Phenol_MetA_deg IS5 RVT_N RVT-GII GIIM IS5 conj_PilL Feature: gene Location: 86043-87701 bp Feature: domain Description: LC_FACS_bac Location: 86151-87648 bp Feature: domain Description: LC_FACS_bac Location: 86151-87648 bp Feature: gene Location: 88004-88969 bp Feature: domain Description: Inovirus_Gp2 Location: 88439-88889 bp Feature: domain Description: Inovirus_Gp2 Location: 8843 9-88889 bp Feature: gene Location: 89316-90602 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89520-90210 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89520-90210 bp Feature: gene Location: 91585-91920 bp Feature: domain Description: TnpB_IS66 Location: 91603-91891 bp Feature: domain Description: TnpB_IS66 Location: 91603 -91891 bp Feature: gene Location: 91984-93321 bp Feature: domain Description: LZ_Tnp_IS66 Location: 92119-92338 bp Feature: domain Description: LZ_Tnp_IS66 Location: 92119-923 3 8 bp Feature: domain Description: zf-IS66 Location: 92359-92485 bp Feature: domain Description: zf-IS66 Location: 923 59-92485 bp Feature: domain Description: DDE_Tnp_IS66 Location: 92527-93301 bp Feature: domain Description: DDE_Tnp_IS66 Location: 92527-93 3 01 bp Feature: gene Location: 94252-95550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94255-94846 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94255-94846 bp Feature: domain Description: GIIM Note: maturase Location: 94900-95131 bp Feature: domain Description: GIIM Note: maturase Location: 94900-9513 1 bp Feature: gene Location: 95730-95861 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 95736-95847 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 9573 6-95847 bp Feature: gene Location: 96556-97365 bp Feature: domain Description: nitrilases_CHs Location: 96565-97282 bp Feature: domain Description: nitrilases_CHs Location: 96565-97282 bp Feature: gene Location: 98719-99255 bp Feature: domain Description: Phenol_MetA_deg Location: 98818-99232 bp Feature: domain Description: Phenol_MetA_deg Location: 98818-9923 2 bp Feature: gene Location: 99687-100220 bp Feature: domain Description: IS5 Location: 99873-100209 bp Feature: domain Description: IS5 Location: 99873 -100209 bp Feature: gene Location: 100813-102318 bp Feature: RT Description: RVT_N Location: 100894-101119 bp Feature: RT Description: RVT_N Location: 100894-101119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101170-101812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 101170-101812 bp Feature: domain Description: GIIM Note: maturase Location: 101863-102097 bp Feature: domain Description: GIIM Note: maturase Location: 101863 -102097 bp Feature: gene Location: 102430-102849 bp Feature: domain Description: IS5 Location: 102433-102814 bp Feature: domain Description: IS5 Location: 10243 3 -102814 bp Feature: gene Location: 103110-103694 bp Feature: domain Description: conj_PilL Location: 103278-103587 bp Feature: domain Description: conj_PilL Location: 103 278-103 587 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LC_FACS_bac (cd05932), Inovirus_Gp2 (pfam11726), RVT-GII, TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), nitrilases_CHs (cd07564)
RVT_N (pfam13655), IS5 (COG3039), conj_PilL (TIGR03748), Phenol_MetA_deg (pfam13557)

Seq: WOAR01000087.1 Pseudomonas aeruginosa strain PA176 NODE_87_length_831_cov_1.299716, whole genome shotgun sequence (831 bp)
Overview 1 RT 1: 3-717 bp Neighborhood of RT #1 [3, 830] RVT-GII GIIM Feature: gene Location: 3-830 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-432 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6-4 32 bp Feature: domain Description: GIIM Note: maturase Location: 486-717 bp Feature: domain Description: GIIM Note: maturase Location: 4 86-717 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)