myRT

myRT report for GCA_009727625.1_ASM972762v1

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Seq: WOBA01000001.1 Aliivibrio fischeri strain etasm.1.1 E._tasm_1.1.4336_contig_1, whole genome shotgun sequence (106820 bp)
Overview 1 RT 1: 32945-38155 bp Neighborhood of RT #1 [32945, 38316] Phage_cap_P2 Ogr_Delta RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 32945-33988 bp Feature: domain Description: Phage_cap_P2 Location: 32972-33941 bp Feature: domain Description: Phage_cap_P2 Location: 32972-33941 bp Feature: gene Location: 34039-34311 bp Feature: domain Description: Ogr_Delta Location: 34051-34177 bp Feature: domain Description: Ogr_Delta Location: 34051 -341 77 bp Feature: gene Location: 35077-36000 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 35179-35770 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 351 79-35770 bp Feature: gene Location: 36002-37642 bp Feature: domain Description: COG3950 Location: 36206-37586 bp Feature: domain Description: COG3950 Location: 36206-37586 bp Feature: gene Location: 37651-38316 bp Feature: domain Description: TIGR02646 Location: 37714-38155 bp Feature: domain Description: TIGR02646 Location: 3771 4-381 55 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_cap_P2 (pfam05125), Ogr_Delta (pfam04606), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: WOBA01000007.1 Aliivibrio fischeri strain etasm.1.1 E._tasm_1.1.4336_contig_7, whole genome shotgun sequence (693953 bp)
Overview 1 RT 1: 226348-232547 bp 2 RT 2: 492023-495929 bp Neighborhood of RT #1 [226348, 232582] HigA SLATT_5 RVT-UG3 RVT-UG8 EcKinase EcKinase SpoU-like Neighborhood of RT #2 [492023, 495929] RelE CSP_CDS YsdA RVT-UG28 Feature: gene Location: 226348-226596 bp Feature: domain Description: HigA Location: 226351-226537 bp Feature: domain Description: HigA Location: 2 2 6351-2 2 6537 bp Feature: gene Location: 227228-227821 bp Feature: domain Description: SLATT_5 Location: 227243-227816 bp Feature: domain Description: SLATT_5 Location: 2 2 72 43-2 2 7816 bp Feature: gene Location: 227824-229002 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 228112-228562 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 2 2 8112 -2 2 8562 bp Feature: gene Location: 228995-230920 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 229493-229940 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 2 2 9493-2 2 9940 bp Feature: gene Location: 231130-232089 bp Feature: domain Description: EcKinase Location: 231337-231556 bp Feature: domain Description: EcKinase Location: 2 31337-2 31556 bp Feature: domain Description: EcKinase Location: 231694-231922 bp Feature: domain Description: EcKinase Location: 2 31694-2 3192 2 bp Feature: gene Location: 232124-232582 bp Feature: domain Description: SpoU-like Location: 232145-232547 bp Feature: domain Description: SpoU-like Location: 2 32 145-2 32 547 bp Feature: gene Location: 492023-492478 bp Feature: domain Description: RelE Location: 492158-492461 bp Feature: domain Description: RelE Location: 492 158-492 461 bp Feature: gene Location: 492536-493126 bp Feature: domain Description: CSP_CDS Location: 492545-492731 bp Feature: domain Description: CSP_CDS Location: 492 545-492 731 bp Feature: domain Description: YsdA Location: 492830-493076 bp Feature: domain Description: YsdA Location: 492 830-493076 bp Feature: gene Location: 493290-494915 bp Feature: RT Description: RVT-UG28 Note: UG28 RT Location: 493704-494340 bp Feature: RT Description: RVT-UG2 8 Note: UG2 8 RT Location: 493704-494340 bp Feature: gene Location: 495070-495675 bp Feature: gene Location: 495687-495929 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HigA (COG5499), SLATT_5 (pfam18160), RVT-UG3, RVT-UG8, EcKinase (pfam02958), SpoU-like (cd18098), RelE (pfam06296), CSP_CDS (cd04458), YsdA (COG3326), RVT-UG28

Seq: WOBA01000009.1 Aliivibrio fischeri strain etasm.1.1 E._tasm_1.1.4336_contig_9, whole genome shotgun sequence (2677 bp)
Overview 1 RT 1: 138-1850 bp Neighborhood of RT #1 [138, 2614] LbH_XAT RVT-UG15 Feature: gene Location: 138-770 bp Feature: domain Description: LbH_XAT Location: 225-699 bp Feature: domain Description: LbH_XAT Location: 225-699 bp Feature: gene Location: 1022-2614 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1436-1850 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 143 6-1850 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LbH_XAT (cd03349), RVT-UG15