myRT

myRT report for GCA_009734915.1_ASM973491v1

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Seq: WMGQ01000025.1 Enterococcus faecium strain H53S1 contig00025, whole genome shotgun sequence (33855 bp)
Overview 1 RT 1: 17931-23284 bp Neighborhood of RT #1 [17931, 23298] HTH_XRE Rol_Rep_N Rep_trans RVT-GII HNHc ArdA Feature: gene Location: 17931-18221 bp Feature: gene Location: 18480-19664 bp Feature: domain Description: HTH_XRE Location: 18510-18654 bp Feature: domain Description: HTH_XRE Location: 1 851 0-1 8654 bp Feature: domain Description: Rol_Rep_N Location: 18687-18951 bp Feature: domain Description: Rol_Rep_N Location: 1 8687-1 8951 bp Feature: domain Description: Rep_trans Location: 18975-19587 bp Feature: domain Description: Rep_trans Location: 1 8975-1 9587 bp Feature: gene Location: 20544-22454 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20877-21615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20877-21 61 5 bp Feature: domain Description: HNHc Note: nucleases Location: 22170-22335 bp Feature: domain Description: HNHc Note: nucleases Location: 221 70-22335 bp Feature: gene Location: 22642-22782 bp Feature: gene Location: 22795-23298 bp Feature: domain Description: ArdA Location: 22813-23284 bp Feature: domain Description: ArdA Location: 2281 3-23284 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), RVT-GII, HNHc (smart00507), ArdA (pfam07275)

Seq: WMGQ01000121.1 Enterococcus faecium strain H53S1 contig00121, whole genome shotgun sequence (3474 bp)
Overview 1 RT 1: 90-3349 bp Neighborhood of RT #1 [90, 3381] RVT-AbiP2 HsdM Feature: gene Location: 90-1565 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 438-903 bp Feature: RT Description: RVT-AbiP2 Note: AbiP2 RT Location: 438-903 bp Feature: gene Location: 1903-3381 bp Feature: domain Description: HsdM Location: 1924-3349 bp Feature: domain Description: HsdM Location: 192 4-3349 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-AbiP2, HsdM (COG0286)

Seq: WMGQ01000127.1 Enterococcus faecium strain H53S1 contig00127, whole genome shotgun sequence (2747 bp)
Overview 1 RT 1: 319-2503 bp Neighborhood of RT #1 [319, 2616] RVT-GII HNHc Feature: gene Location: 319-552 bp Feature: gene Location: 739-2616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1054-1792 bp Feature: domain Description: HNHc Note: nucleases Location: 2350-2503 bp Feature: domain Description: HNHc Note: nucleases Location: 23 50-2503 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, HNHc (smart00507)