myRT

myRT report for GCA_009739345.1_ASM973934v1

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Seq: SCPM01000001.1 Prevotella copri isolate P2B-2 tig00013455, whole genome shotgun sequence (3791000 bp)
Overview 1 RT 1: 308582-316018 bp 2 RT 2: 746932-752473 bp 3 RT 3: 1612791-1622800 bp 4 RT 4: 2377616-2389884 bp 5 RT 5: 2896486-2899155 bp 6 RT 6: 3066426-3072501 bp 7 RT 7: 3220457-3224609 bp 8 RT 8: 3267779-3272007 bp 9 RT 9: 3466549-3474981 bp 10 RT 10: 3566653-3577727 bp 11 RT 11: 3670450-3674645 bp Neighborhood of RT #1 [308582, 316020] PDDEXK_2 PDDEXK_2 Yae1_N T_den_put_tspse RVT-GII GIIM PRK05290 ResB cytochr_II_ccsB cytochr_II_ccsB Neighborhood of RT #2 [746932, 752751] DegT_DnrJ_EryC1 RVT-GII GIIM AAA-ATPase_like Neighborhood of RT #3 [1612791, 1622808] Glyco_hydr_30_2 Glyco_hydro_30C Glyco_hydr_30_2 XynC RVT-GII GIIM SusD OMP_RagA_SusC Neighborhood of RT #4 [2377616, 2389889] OMP_RagA_SusC Laminin_G_3 RVT-GII GIIM COG3292 COG3292 COG3292 COG3292 Y_Y_Y HTH_ARAC Cyc-maltodext_N AmyAc_bac_CMD_like_3 AmyAc_bac_CMD_like_3 Cyc-maltodext_C Neighborhood of RT #5 [2896486, 2899175] group_II_RT_mat RVT-GII GT9_LPS_heptosyltransferase Neighborhood of RT #6 [3066426, 3072992] PRK11824 RVT-GII GIIM Peptidase_S41_CPP Neighborhood of RT #7 [3220457, 3224609] RVT-DGRs Neighborhood of RT #8 [3267779, 3272007] Lipocalin_4 HMPP_kinase HMPP_kinase HTH_18 RVT-GII GIIM Neighborhood of RT #9 [3466549, 3474989] DDE_Tnp_1 DDE_Tnp_1_4 RVT-GII GIIM Cellulase OMP_RagA_SusC Neighborhood of RT #10 [3566653, 3577727] DUF1896 N6_Mtase COG4646 RVT_N RVT-GII YkfC Neighborhood of RT #11 [3670450, 3674746] ABCC_MRP_Like RVT-GII RVT-GII GIIM PRK15389 DUF4954 Feature: gene Location: 308582-309562 bp Feature: domain Description: PDDEXK_2 Location: 308603-308969 bp Feature: domain Description: PDDEXK_2 Location: 308603-308969 bp Feature: domain Description: PDDEXK_2 Location: 309140-309329 bp Feature: domain Description: PDDEXK_2 Location: 3091 40-309329 bp Feature: domain Description: Yae1_N Location: 309332-309404 bp Feature: domain Description: Yae1 _N Location: 309332-309404 bp Feature: domain Description: T_den_put_tspse Location: 309413-309560 bp Feature: domain Description: T_den_put_tspse Location: 30941 3-309560 bp Feature: gene Location: 309824-309994 bp Feature: gene Location: 310040-311446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 310382-311000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 0382-31 1 000 bp Feature: domain Description: GIIM Note: maturase Location: 311054-311267 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 054-31 1 267 bp Feature: gene Location: 311706-313349 bp Feature: domain Description: PRK05290 Location: 311724-313344 bp Feature: domain Description: PRK05290 Location: 31 1 724-31 3344 bp Feature: gene Location: 313756-316020 bp Feature: domain Description: ResB Location: 313957-314308 bp Feature: domain Description: ResB Location: 31 3957-31 4308 bp Feature: domain Description: cytochr_II_ccsB Location: 315370-315712 bp Feature: domain Description: cytochr_II_ccsB Location: 31 5370-31 571 2 bp Feature: domain Description: cytochr_II_ccsB Location: 315760-316018 bp Feature: domain Description: cytochr_II_ccsB Location: 31 5760-31 601 8 bp Feature: gene Location: 746932-747153 bp Feature: gene Location: 747297-748460 bp Feature: domain Description: DegT_DnrJ_EryC1 Location: 747360-748437 bp Feature: domain Description: DegT_DnrJ_EryC1 Location: 747360-748437 bp Feature: gene Location: 749542-750945 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749884-750502 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 749884-750502 bp Feature: domain Description: GIIM Note: maturase Location: 750556-750766 bp Feature: domain Description: GIIM Note: maturase Location: 750556-750766 bp Feature: gene Location: 751176-751361 bp Feature: gene Location: 751627-752751 bp Feature: domain Description: AAA-ATPase_like Location: 751654-752473 bp Feature: domain Description: AAA-ATPase_like Location: 751 654-752473 bp Feature: gene Location: 1612791-1614365 bp Feature: domain Description: Glyco_hydr_30_2 Location: 1612890-1613967 bp Feature: domain Description: Glyco_hydr_30_2 Location: 1 61 2890-1 61 3967 bp Feature: domain Description: Glyco_hydro_30C Location: 1614063-1614354 bp Feature: domain Description: Glyco_hydro_30C Location: 1 61 4063-1 61 4354 bp Feature: gene Location: 1614420-1616174 bp Feature: domain Description: Glyco_hydr_30_2 Location: 1614498-1615569 bp Feature: domain Description: Glyco_hydr_30_2 Location: 1 61 4498-1 61 5569 bp Feature: domain Description: XynC Location: 1615638-1616010 bp Feature: domain Description: XynC Location: 1 61 5638-1 61 601 0 bp Feature: gene Location: 1616984-1618390 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1617326-1617944 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 61 7326-1 61 7944 bp Feature: domain Description: GIIM Note: maturase Location: 1617998-1618205 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 7998-1 61 8205 bp Feature: gene Location: 1618862-1620478 bp Feature: domain Description: SusD Location: 1619000-1620254 bp Feature: domain Description: SusD Location: 1 61 9000-1 620254 bp Feature: gene Location: 1620535-1622808 bp Feature: domain Description: OMP_RagA_SusC Location: 1620625-1622800 bp Feature: domain Description: OMP_RagA_SusC Location: 1 620625-1 622800 bp Feature: gene Location: 2377616-2380705 bp Feature: domain Description: OMP_RagA_SusC Location: 2377697-2380697 bp Feature: domain Description: OMP_RagA_SusC Location: 2377697-2380697 bp Feature: gene Location: 2380726-2382618 bp Feature: domain Description: Laminin_G_3 Location: 2381239-2381416 bp Feature: domain Description: Laminin_G_3 Location: 2381 239-2381 41 6 bp Feature: gene Location: 2382916-2384319 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2383258-2383876 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2383258-2383876 bp Feature: domain Description: GIIM Note: maturase Location: 2383930-2384140 bp Feature: domain Description: GIIM Note: maturase Location: 2383930-23841 40 bp Feature: gene Location: 2384853-2387843 bp Feature: domain Description: COG3292 Location: 2384931-2385882 bp Feature: domain Description: COG3292 Location: 2384931 -2385882 bp Feature: domain Description: COG3292 Location: 2385939-2386179 bp Feature: domain Description: COG3292 Location: 2385939-23861 79 bp Feature: domain Description: COG3292 Location: 2386221-2386434 bp Feature: domain Description: COG3292 Location: 2386221 -2386434 bp Feature: domain Description: COG3292 Location: 2386512-2386734 bp Feature: domain Description: COG3292 Location: 238651 2-2386734 bp Feature: domain Description: Y_Y_Y Location: 2387055-2387217 bp Feature: domain Description: Y_Y_Y Location: 2387055-238721 7 bp Feature: domain Description: HTH_ARAC Location: 2387562-2387805 bp Feature: domain Description: HTH_ARAC Location: 2387562-2387805 bp Feature: gene Location: 2387964-2389889 bp Feature: domain Description: Cyc-maltodext_N Location: 2388039-2388294 bp Feature: domain Description: Cyc-maltodext_N Location: 2388039-2388294 bp Feature: domain Description: AmyAc_bac_CMD_like_3 Location: 2388327-2388798 bp Feature: domain Description: AmyAc_bac_CMD_like_3 Location: 2388327-2388798 bp Feature: domain Description: AmyAc_bac_CMD_like_3 Location: 2388834-2389629 bp Feature: domain Description: AmyAc_bac_CMD_like_3 Location: 2388834-2389629 bp Feature: domain Description: Cyc-maltodext_C Location: 2389662-2389884 bp Feature: domain Description: Cyc-maltodext_C Location: 2389662-2389884 bp Feature: gene Location: 2896486-2896914 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2896660-2896807 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 2896660-2896807 bp Feature: gene Location: 2896973-2897122 bp Feature: gene Location: 2897144-2897635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2897150-2897435 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28971 50-2897435 bp Feature: gene Location: 2897688-2897882 bp Feature: gene Location: 2898090-2899175 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 2898105-2899155 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 28981 05-28991 55 bp Feature: gene Location: 3066426-3068744 bp Feature: domain Description: PRK11824 Location: 3066432-3068538 bp Feature: domain Description: PRK1 1 824 Location: 3066432-3068538 bp Feature: gene Location: 3069013-3069183 bp Feature: gene Location: 3069229-3070635 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3069571-3070189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3069571 -30701 89 bp Feature: domain Description: GIIM Note: maturase Location: 3070243-3070456 bp Feature: domain Description: GIIM Note: maturase Location: 3070243-3070456 bp Feature: gene Location: 3071115-3071306 bp Feature: gene Location: 3071328-3072992 bp Feature: domain Description: Peptidase_S41_CPP Location: 3071421-3072501 bp Feature: domain Description: Peptidase_S41 _CPP Location: 3071 421 -3072501 bp Feature: gene Location: 3220457-3221740 bp Feature: gene Location: 3221722-3222063 bp Feature: gene Location: 3222275-3223879 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3222479-3223226 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3222479-3223226 bp Feature: gene Location: 3223880-3224269 bp Feature: gene Location: 3224367-3224609 bp Feature: gene Location: 3267779-3268270 bp Feature: domain Description: Lipocalin_4 Location: 3267905-3268166 bp Feature: domain Description: Lipocalin_4 Location: 3267905-32681 66 bp Feature: gene Location: 3268365-3269327 bp Feature: domain Description: HMPP_kinase Location: 3268371-3268806 bp Feature: domain Description: HMPP_kinase Location: 3268371 -3268806 bp Feature: domain Description: HMPP_kinase Location: 3268848-3268968 bp Feature: domain Description: HMPP_kinase Location: 3268848-3268968 bp Feature: domain Description: HTH_18 Location: 3269076-3269310 bp Feature: domain Description: HTH_1 8 Location: 3269076-326931 0 bp Feature: gene Location: 3270147-3271112 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3270489-3271107 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3270489-3271 1 07 bp Feature: gene Location: 3271160-3271546 bp Feature: domain Description: GIIM Note: maturase Location: 3271163-3271370 bp Feature: domain Description: GIIM Note: maturase Location: 3271 1 63-3271 370 bp Feature: gene Location: 3271864-3272007 bp Feature: gene Location: 3466549-3467034 bp Feature: domain Description: DDE_Tnp_1 Location: 3466558-3466846 bp Feature: domain Description: DDE_Tnp_1 Location: 3466558-3466846 bp Feature: gene Location: 3467076-3467834 bp Feature: domain Description: DDE_Tnp_1_4 Location: 3467199-3467790 bp Feature: domain Description: DDE_Tnp_1 _4 Location: 34671 99-3467790 bp Feature: gene Location: 3468685-3470088 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3469027-3469645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3469027-3469645 bp Feature: domain Description: GIIM Note: maturase Location: 3469699-3469909 bp Feature: domain Description: GIIM Note: maturase Location: 3469699-3469909 bp Feature: gene Location: 3470291-3471694 bp Feature: domain Description: Cellulase Location: 3470699-3471302 bp Feature: domain Description: Cellulase Location: 3470699-3471 302 bp Feature: gene Location: 3471816-3474989 bp Feature: domain Description: OMP_RagA_SusC Location: 3471906-3474981 bp Feature: domain Description: OMP_RagA_SusC Location: 3471 906-3474981 bp Feature: gene Location: 3566653-3567240 bp Feature: domain Description: DUF1896 Location: 3566812-3567235 bp Feature: domain Description: DUF1 896 Location: 356681 2-3567235 bp Feature: gene Location: 3567227-3571999 bp Feature: domain Description: N6_Mtase Location: 3567539-3568235 bp Feature: domain Description: N6_Mtase Location: 3567539-3568235 bp Feature: domain Description: COG4646 Location: 3569621-3571619 bp Feature: domain Description: COG4646 Location: 3569621 -3571 61 9 bp Feature: gene Location: 3572605-3574341 bp Feature: domain Description: RVT_N Location: 3572728-3572971 bp Feature: domain Description: RVT_N Location: 3572728-3572971 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3573016-3573664 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357301 6-3573664 bp Feature: domain Description: YkfC Location: 3573874-3573964 bp Feature: domain Description: YkfC Location: 3573874-3573964 bp Feature: gene Location: 3574295-3575497 bp Feature: gene Location: 3576108-3577727 bp Feature: gene Location: 3670450-3670698 bp Feature: domain Description: ABCC_MRP_Like Location: 3670456-3670690 bp Feature: domain Description: ABCC_MRP_Like Location: 3670456-3670690 bp Feature: gene Location: 3671005-3671175 bp Feature: gene Location: 3671290-3671943 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3671563-3671929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3671 563-3671 929 bp Feature: gene Location: 3671964-3672623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3671967-3672177 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3671 967-36721 77 bp Feature: domain Description: GIIM Note: maturase Location: 3672231-3672444 bp Feature: domain Description: GIIM Note: maturase Location: 3672231 -3672444 bp Feature: gene Location: 3672745-3674370 bp Feature: domain Description: PRK15389 Location: 3672748-3674332 bp Feature: domain Description: PRK1 5389 Location: 3672748-3674332 bp Feature: gene Location: 3674459-3674746 bp Feature: domain Description: DUF4954 Location: 3674465-3674645 bp Feature: domain Description: DUF4954 Location: 3674465-3674645 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PDDEXK_2 (pfam12784), Yae1_N (pfam09811), T_den_put_tspse (TIGR01784), RVT-GII, GIIM (pfam08388), PRK05290 (hybrid cluster protein; Provisional), ResB (pfam05140), cytochr_II_ccsB (TIGR03144), DegT_DnrJ_EryC1 (pfam01041), AAA-ATPase_like (pfam09820)
Glyco_hydr_30_2 (pfam14587), Glyco_hydro_30C (pfam17189), XynC (COG5520), SusD (NF033071), OMP_RagA_SusC (TIGR04056), Laminin_G_3 (pfam13385), COG3292 (Periplasmic ligand-binding sensor domain ), Y_Y_Y (pfam07495), HTH_ARAC (smart00342), Cyc-maltodext_N (pfam09087)
AmyAc_bac_CMD_like_3 (cd11340), Cyc-maltodext_C (pfam10438), group_II_RT_mat (TIGR04416), GT9_LPS_heptosyltransferase (cd03789), PRK11824 (polynucleotide phosphorylase/polyadenylase; Provisional), Peptidase_S41_CPP (cd07560), RVT-DGRs, Lipocalin_4 (pfam13648), HMPP_kinase (cd01169), HTH_18 (pfam12833)
DDE_Tnp_1 (pfam01609), DDE_Tnp_1_4 (pfam13701), Cellulase (pfam00150), DUF1896 (pfam08989), N6_Mtase (pfam02384), COG4646 (Adenine-specific DNA methylase, N12 class ), RVT_N (pfam13655), YkfC (COG3344), ABCC_MRP_Like (cd03228), PRK15389 (fumarate hydratase; Provisional)
DUF4954 (pfam16314)