myRT

myRT report for GCA_009741735.1_ASM974173v1

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Seq: WHOH01000001.1 Lentibacillus sp. JNUCC-1 contig00001, whole genome shotgun sequence (2174790 bp)
Overview 1 RT 1: 112167-118262 bp 2 RT 2: 301575-306374 bp 3 RT 3: 385909-391265 bp 4 RT 4: 399129-404667 bp 5 RT 5: 855391-860076 bp 6 RT 6: 1392943-1397846 bp 7 RT 7: 1670621-1676779 bp 8 RT 8: 1949774-1953901 bp Neighborhood of RT #1 [112167, 118303] InsG RVT-GII GIIM MFS_MdtG_SLC18_like MFS_LmrB_MDR_like Neighborhood of RT #2 [301575, 306382] RVT-GII GIIM fabF fabH Neighborhood of RT #3 [385909, 391270] MPP_Mre11_N YhzD RVT-GII GIIM PRK07659 HtpG Neighborhood of RT #4 [399129, 404705] YozB RVT-GII GIIM NhaP YhhN Neighborhood of RT #5 [855391, 860076] AP_endonuc_2 YcjR RVT-GII GIIM PRK12804 Neighborhood of RT #6 [1392943, 1397869] SAICAR_synt_PurC RVT-GII GIIM ABC2_membrane_2 CcmA Neighborhood of RT #7 [1670621, 1676796] PRK06520 PHD_like RVT-GII HNHc butanediol_DH_like Neighborhood of RT #8 [1949774, 1953915] Tra5 RVT-GII HNHc LysR PBP2_LTTR_substrate Feature: gene Location: 112167-113402 bp Feature: domain Description: InsG Location: 112350-113304 bp Feature: domain Description: InsG Location: 1 1 2350-1 1 3304 bp Feature: gene Location: 113430-113684 bp Feature: gene Location: 113761-115020 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113956-114574 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 3956-1 1 4574 bp Feature: domain Description: GIIM Note: maturase Location: 114625-114859 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 4625-1 1 4859 bp Feature: gene Location: 115609-116754 bp Feature: domain Description: MFS_MdtG_SLC18_like Location: 115627-116725 bp Feature: domain Description: MFS_MdtG_SLC1 8_like Location: 1 1 5627-1 1 6725 bp Feature: gene Location: 116876-118303 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 116951-118262 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 1 1 6951 -1 1 8262 bp Feature: gene Location: 301575-301781 bp Feature: gene Location: 301891-302202 bp Feature: gene Location: 302843-304102 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303038-303656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 303038-303656 bp Feature: domain Description: GIIM Note: maturase Location: 303707-303941 bp Feature: domain Description: GIIM Note: maturase Location: 303707-303941 bp Feature: gene Location: 304181-305419 bp Feature: domain Description: fabF Location: 304193-305408 bp Feature: domain Description: fabF Location: 3041 93-305408 bp Feature: gene Location: 305444-306382 bp Feature: domain Description: fabH Location: 305447-306374 bp Feature: domain Description: fabH Location: 305447-306374 bp Feature: gene Location: 385909-387141 bp Feature: domain Description: MPP_Mre11_N Location: 385933-386584 bp Feature: domain Description: MPP_Mre1 1 _N Location: 385933-386584 bp Feature: gene Location: 387311-387496 bp Feature: domain Description: YhzD Location: 387314-387494 bp Feature: domain Description: YhzD Location: 38731 4-387494 bp Feature: gene Location: 387746-389005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387941-388559 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 387941 -388559 bp Feature: domain Description: GIIM Note: maturase Location: 388610-388844 bp Feature: domain Description: GIIM Note: maturase Location: 38861 0-388844 bp Feature: gene Location: 389612-390388 bp Feature: domain Description: PRK07659 Location: 389615-390380 bp Feature: domain Description: PRK07659 Location: 38961 5-390380 bp Feature: gene Location: 390488-391270 bp Feature: domain Description: HtpG Location: 390494-391265 bp Feature: domain Description: HtpG Location: 390494-391 265 bp Feature: gene Location: 399129-399659 bp Feature: domain Description: YozB Location: 399141-399657 bp Feature: domain Description: YozB Location: 3991 41 -399657 bp Feature: gene Location: 399759-400136 bp Feature: gene Location: 400737-401996 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400932-401550 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 400932-401 550 bp Feature: domain Description: GIIM Note: maturase Location: 401601-401835 bp Feature: domain Description: GIIM Note: maturase Location: 401 601 -401 835 bp Feature: gene Location: 402074-403873 bp Feature: domain Description: NhaP Location: 402083-403304 bp Feature: domain Description: NhaP Location: 402083-403304 bp Feature: gene Location: 404052-404705 bp Feature: domain Description: YhhN Location: 404139-404667 bp Feature: domain Description: YhhN Location: 4041 39-404667 bp Feature: gene Location: 855391-856293 bp Feature: domain Description: AP_endonuc_2 Location: 855517-856108 bp Feature: domain Description: AP_endonuc_2 Location: 85551 7-8561 08 bp Feature: gene Location: 856306-857109 bp Feature: domain Description: YcjR Location: 856363-857068 bp Feature: domain Description: YcjR Location: 856363-857068 bp Feature: gene Location: 857481-858740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 857676-858294 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 857676-858294 bp Feature: domain Description: GIIM Note: maturase Location: 858345-858579 bp Feature: domain Description: GIIM Note: maturase Location: 858345-858579 bp Feature: gene Location: 859716-859850 bp Feature: domain Description: PRK12804 Location: 859737-859848 bp Feature: domain Description: PRK1 2804 Location: 859737-859848 bp Feature: gene Location: 859945-860076 bp Feature: gene Location: 1392943-1393626 bp Feature: domain Description: SAICAR_synt_PurC Location: 1392952-1393573 bp Feature: domain Description: SAICAR_synt_PurC Location: 1 392952-1 393573 bp Feature: gene Location: 1393833-1393967 bp Feature: gene Location: 1394042-1395358 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1394297-1394978 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 394297-1 394978 bp Feature: domain Description: GIIM Note: maturase Location: 1395038-1395266 bp Feature: domain Description: GIIM Note: maturase Location: 1 395038-1 395266 bp Feature: gene Location: 1396287-1397003 bp Feature: domain Description: ABC2_membrane_2 Location: 1396443-1396842 bp Feature: domain Description: ABC2_membrane_2 Location: 1 396443-1 396842 bp Feature: gene Location: 1397000-1397869 bp Feature: domain Description: CcmA Location: 1397009-1397846 bp Feature: domain Description: CcmA Location: 1 397009-1 397846 bp Feature: gene Location: 1670621-1671739 bp Feature: domain Description: PRK06520 Location: 1670633-1671731 bp Feature: domain Description: PRK06520 Location: 1 670633-1 671 731 bp Feature: gene Location: 1672237-1672674 bp Feature: domain Description: PHD_like Location: 1672261-1672654 bp Feature: domain Description: PHD_like Location: 1 672261 -1 672654 bp Feature: gene Location: 1673074-1674948 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1673446-1674145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 673446-1 6741 45 bp Feature: domain Description: HNHc Note: nucleases Location: 1674700-1674838 bp Feature: domain Description: HNHc Note: nucleases Location: 1 674700-1 674838 bp Feature: gene Location: 1675063-1675242 bp Feature: gene Location: 1675747-1676796 bp Feature: domain Description: butanediol_DH_like Location: 1675750-1676779 bp Feature: domain Description: butanediol_DH_like Location: 1 675750-1 676779 bp Feature: gene Location: 1949774-1950388 bp Feature: domain Description: Tra5 Location: 1949804-1950215 bp Feature: domain Description: Tra5 Location: 1 949804-1 95021 5 bp Feature: gene Location: 1950704-1950832 bp Feature: gene Location: 1950837-1952711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1951209-1951908 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 951 209-1 951 908 bp Feature: domain Description: HNHc Note: nucleases Location: 1952463-1952601 bp Feature: domain Description: HNHc Note: nucleases Location: 1 952463-1 952601 bp Feature: gene Location: 1953032-1953265 bp Feature: domain Description: LysR Location: 1953035-1953230 bp Feature: domain Description: LysR Location: 1 953035-1 953230 bp Feature: gene Location: 1953319-1953915 bp Feature: domain Description: PBP2_LTTR_substrate Location: 1953376-1953901 bp Feature: domain Description: PBP2_LTTR_substrate Location: 1 953376-1 953901 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsG (COG3385), RVT-GII, GIIM (pfam08388), MFS_MdtG_SLC18_like (cd17325), MFS_LmrB_MDR_like (cd17503), fabF (TIGR03150), fabH (TIGR00747), MPP_Mre11_N (cd00840), YhzD (pfam14120), PRK07659 (enoyl-CoA hydratase; Provisional)
HtpG (COG0326), YozB (COG2322), NhaP (COG0025), YhhN (pfam07947), AP_endonuc_2 (pfam01261), YcjR (COG1082), PRK12804 (flagellin; Provisional), SAICAR_synt_PurC (cd01415), ABC2_membrane_2 (pfam12679), CcmA (COG4133)
PRK06520 (5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase), PHD_like (pfam12910), HNHc (smart00507), butanediol_DH_like (cd08233), Tra5 (COG2801), LysR (COG0583), PBP2_LTTR_substrate (cd05466)

Seq: WHOH01000003.1 Lentibacillus sp. JNUCC-1 contig00003, whole genome shotgun sequence (1487029 bp)
Overview 1 RT 1: 56697-62270 bp 2 RT 2: 121825-126574 bp 3 RT 3: 390250-395979 bp 4 RT 4: 553206-559937 bp 5 RT 5: 681437-687020 bp 6 RT 6: 775078-781550 bp 7 RT 7: 1014548-1019337 bp 8 RT 8: 1461142-1465992 bp Neighborhood of RT #1 [56697, 62287] 2a45 arsC_pI258_fam RVT-GII GIIM NosY CcmA Neighborhood of RT #2 [121825, 126594] HTH_Tnp_1 HTH_Tnp_1 HTH_32 Tra5 RVT-GII RVT-GII cax PRK07236 PRK07236 Neighborhood of RT #3 [390250, 395979] YeiB RVT-GII HNHc DUF2268 Neighborhood of RT #4 [553206, 560101] PRK07726 RVT-GII GIIM Uup Uup Neighborhood of RT #5 [681437, 687028] CwlO1 NLPC_P60 RVT-GII GIIM BetT Neighborhood of RT #6 [775078, 781837] PRK06080 RVT-GII GIIM PRK07054 MenD Neighborhood of RT #7 [1014548, 1019342] RpmA RVT-GII GIIM SPOB_a SPOB_ab obgE Neighborhood of RT #8 [1461142, 1466015] DUF772 DDE_Tnp_1_3 DDE_Tnp_1_6 RVT-GII GIIM thi_PPkinase Feature: gene Location: 56697-57995 bp Feature: domain Description: 2a45 Location: 56718-57987 bp Feature: domain Description: 2 a45 Location: 56718-57987 bp Feature: gene Location: 58008-58424 bp Feature: domain Description: arsC_pI258_fam Location: 58029-58413 bp Feature: domain Description: arsC_pI2 58_fam Location: 5802 9-58413 bp Feature: gene Location: 59034-60380 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59229-59847 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592 2 9-59847 bp Feature: domain Description: GIIM Note: maturase Location: 59898-60132 bp Feature: domain Description: GIIM Note: maturase Location: 59898-60132 bp Feature: gene Location: 60382-61377 bp Feature: domain Description: NosY Location: 60421-61366 bp Feature: domain Description: NosY Location: 6042 1-61366 bp Feature: gene Location: 61370-62287 bp Feature: domain Description: CcmA Location: 61385-62270 bp Feature: domain Description: CcmA Location: 61385-62 2 70 bp Feature: gene Location: 121825-122334 bp Feature: domain Description: HTH_Tnp_1 Location: 121846-122002 bp Feature: domain Description: HTH_Tnp_1 Location: 12 1846-12 2 002 bp Feature: domain Description: HTH_Tnp_1 Location: 122017-122194 bp Feature: domain Description: HTH_Tnp_1 Location: 12 2 017-12 2 194 bp Feature: gene Location: 122361-123386 bp Feature: domain Description: HTH_32 Location: 122439-122661 bp Feature: domain Description: HTH_32 Location: 12 2 439-12 2 661 bp Feature: domain Description: Tra5 Location: 122670-123213 bp Feature: domain Description: Tra5 Location: 12 2 670-12 32 13 bp Feature: gene Location: 123495-124187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123597-124182 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 3597-12 4182 bp Feature: gene Location: 124190-124354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 124196-124247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 4196-12 42 47 bp Feature: gene Location: 124783-125388 bp Feature: domain Description: cax Location: 124795-125380 bp Feature: domain Description: cax Location: 12 4795-12 5380 bp Feature: gene Location: 125470-126594 bp Feature: domain Description: PRK07236 Location: 125518-125662 bp Feature: domain Description: PRK072 36 Location: 12 5518-12 5662 bp Feature: domain Description: PRK07236 Location: 125782-126574 bp Feature: domain Description: PRK072 36 Location: 12 5782 -12 6574 bp Feature: gene Location: 390250-391413 bp Feature: domain Description: YeiB Location: 390271-391408 bp Feature: domain Description: YeiB Location: 3902 71-391408 bp Feature: gene Location: 391927-392055 bp Feature: gene Location: 392060-393934 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392432-393131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392 432 -393131 bp Feature: domain Description: HNHc Note: nucleases Location: 393686-393824 bp Feature: domain Description: HNHc Note: nucleases Location: 393686-39382 4 bp Feature: gene Location: 394150-394983 bp Feature: domain Description: DUF2268 Location: 394516-394954 bp Feature: domain Description: DUF2 2 68 Location: 394516-394954 bp Feature: gene Location: 395137-395979 bp Feature: gene Location: 553206-555374 bp Feature: domain Description: PRK07726 Location: 553212-555168 bp Feature: domain Description: PRK0772 6 Location: 5532 12 -555168 bp Feature: gene Location: 555783-555947 bp Feature: gene Location: 556571-557890 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 556829-557510 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 55682 9-557510 bp Feature: domain Description: GIIM Note: maturase Location: 557570-557798 bp Feature: domain Description: GIIM Note: maturase Location: 557570-557798 bp Feature: gene Location: 557965-558180 bp Feature: gene Location: 558539-560101 bp Feature: domain Description: Uup Location: 558542-558752 bp Feature: domain Description: Uup Location: 558542 -558752 bp Feature: domain Description: Uup Location: 558779-559937 bp Feature: domain Description: Uup Location: 558779-559937 bp Feature: gene Location: 681437-682726 bp Feature: domain Description: CwlO1 Location: 681440-682289 bp Feature: domain Description: CwlO1 Location: 681440-682 2 89 bp Feature: domain Description: NLPC_P60 Location: 682400-682712 bp Feature: domain Description: NLPC_P60 Location: 682 400-682 712 bp Feature: gene Location: 682888-683061 bp Feature: gene Location: 683763-685082 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 684021-684702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68402 1-684702 bp Feature: domain Description: GIIM Note: maturase Location: 684762-684990 bp Feature: domain Description: GIIM Note: maturase Location: 684762 -684990 bp Feature: gene Location: 685339-685524 bp Feature: gene Location: 685541-687028 bp Feature: domain Description: BetT Location: 685550-687020 bp Feature: domain Description: BetT Location: 685550-68702 0 bp Feature: gene Location: 775078-776010 bp Feature: domain Description: PRK06080 Location: 775126-775996 bp Feature: domain Description: PRK06080 Location: 77512 6-775996 bp Feature: gene Location: 776223-776480 bp Feature: gene Location: 777026-778345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 777284-777965 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7772 84-777965 bp Feature: domain Description: GIIM Note: maturase Location: 778025-778253 bp Feature: domain Description: GIIM Note: maturase Location: 77802 5-7782 53 bp Feature: gene Location: 778686-780098 bp Feature: domain Description: PRK07054 Location: 778722-780081 bp Feature: domain Description: PRK07054 Location: 77872 2 -780081 bp Feature: gene Location: 780095-781837 bp Feature: domain Description: MenD Location: 780101-781550 bp Feature: domain Description: MenD Location: 780101-781550 bp Feature: gene Location: 1014548-1014838 bp Feature: domain Description: RpmA Location: 1014575-1014830 bp Feature: domain Description: RpmA Location: 1014575-1014830 bp Feature: gene Location: 1015017-1015328 bp Feature: gene Location: 1015875-1017194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1016133-1016814 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1016133-1016814 bp Feature: domain Description: GIIM Note: maturase Location: 1016874-1017102 bp Feature: domain Description: GIIM Note: maturase Location: 1016874-1017102 bp Feature: gene Location: 1017510-1018046 bp Feature: domain Description: SPOB_a Location: 1017519-1017684 bp Feature: domain Description: SPOB_a Location: 1017519-1017684 bp Feature: domain Description: SPOB_ab Location: 1017693-1017972 bp Feature: domain Description: SPOB_ab Location: 1017693-1017972 bp Feature: gene Location: 1018056-1019342 bp Feature: domain Description: obgE Location: 1018059-1019337 bp Feature: domain Description: obgE Location: 1018059-1019337 bp Feature: gene Location: 1461142-1461273 bp Feature: gene Location: 1461325-1462788 bp Feature: domain Description: DUF772 Location: 1461481-1461694 bp Feature: domain Description: DUF772 Location: 1461481-1461694 bp Feature: domain Description: DDE_Tnp_1_3 Location: 1462060-1462318 bp Feature: domain Description: DDE_Tnp_1_3 Location: 1462 060-1462 318 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1462387-1462750 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1462 387-1462 750 bp Feature: gene Location: 1463029-1464348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1463287-1463968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14632 87-1463968 bp Feature: domain Description: GIIM Note: maturase Location: 1464028-1464256 bp Feature: domain Description: GIIM Note: maturase Location: 146402 8-14642 56 bp Feature: gene Location: 1464614-1464904 bp Feature: gene Location: 1465356-1466015 bp Feature: domain Description: thi_PPkinase Location: 1465416-1465992 bp Feature: domain Description: thi_PPkinase Location: 1465416-1465992 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2a45 (TIGR00935), arsC_pI258_fam (TIGR02691), RVT-GII, GIIM (pfam08388), NosY (COG1277), CcmA (COG4133), HTH_Tnp_1 (pfam01527), HTH_32 (pfam13565), Tra5 (COG2801), cax (TIGR00378)
PRK07236 (hypothetical protein; Provisional), YeiB (COG2311), HNHc (smart00507), DUF2268 (pfam10026), PRK07726 (DNA topoisomerase 3), Uup (COG0488), CwlO1 (COG3883), NLPC_P60 (pfam00877), BetT (COG1292), PRK06080 (1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated)
PRK07054 (isochorismate synthase), MenD (COG1165), RpmA (COG0211), SPOB_a (pfam14689), SPOB_ab (pfam14682), obgE (PRK12299), DUF772 (pfam05598), DDE_Tnp_1_3 (pfam13612), DDE_Tnp_1_6 (pfam13751), thi_PPkinase (TIGR01378)