myRT

myRT report for GCA_009741775.1_ASM974177v1

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Seq: WPDX01000176.1 Shigella flexneri strain 2014ZH027 NODE_176_length_5855_cov_393.428_ID_63080, whole genome shotgun sequence (5855 bp)
Overview 1 RT 1: 3151-5854 bp Neighborhood of RT #1 [3151, 5854] COG3547 RVT-GII GIIM Feature: gene Location: 3151-3636 bp Feature: domain Description: COG3547 Location: 3169-3622 bp Feature: domain Description: COG3547 Location: 31 69-3622 bp Feature: gene Location: 3732-3899 bp Feature: gene Location: 3925-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 -4765 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: gene Location: 5153-5536 bp Feature: gene Location: 5621-5854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPDX01000178.1 Shigella flexneri strain 2014ZH027 NODE_178_length_5707_cov_793.372_ID_63084, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPDX01000235.1 Shigella flexneri strain 2014ZH027 NODE_235_length_2736_cov_360.601_ID_63198, whole genome shotgun sequence (2736 bp)
Overview 1 RT 1: 2-2690 bp Neighborhood of RT #1 [2, 2690] PHA02517 RVT-GII GIIM Feature: gene Location: 2-325 bp Feature: domain Description: PHA02517 Location: 5-326 bp Feature: domain Description: PHA02517 Location: 5-3 26 bp Feature: gene Location: 502-2025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1507 bp Feature: domain Description: GIIM Note: maturase Location: 1582-1780 bp Feature: domain Description: GIIM Note: maturase Location: 1582-1780 bp Feature: gene Location: 2319-2690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)