myRT

myRT report for GCA_009741915.1_ASM974191v1

Download annotations/find similar RTs

Seq: WPDJ01000172.1 Shigella flexneri strain 2017ZH007 NODE_172_length_6232_cov_376.555_ID_62818, whole genome shotgun sequence (6232 bp)
Overview 1 RT 1: 3-3068 bp Neighborhood of RT #1 [3, 3082] PHA02517 DDE_Tnp_IS66 RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-389 bp Feature: domain Description: PHA02517 Location: 6-387 bp Feature: domain Description: PHA0251 7 Location: 6-387 bp Feature: gene Location: 483-614 bp Feature: domain Description: DDE_Tnp_IS66 Location: 495-588 bp Feature: domain Description: DDE_Tnp_IS66 Location: 495-588 bp Feature: gene Location: 1175-2308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1277-1931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 277-1 931 bp Feature: domain Description: GIIM Note: maturase Location: 2009-2231 bp Feature: domain Description: GIIM Note: maturase Location: 2009-2231 bp Feature: gene Location: 2424-2570 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2436-2547 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2436-2547 bp Feature: gene Location: 2597-3082 bp Feature: domain Description: COG3547 Location: 2615-3068 bp Feature: domain Description: COG3547 Location: 261 5-3068 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), PHA02517 (putative transposase OrfB; Reviewed), DDE_Tnp_IS66 (pfam03050)

Seq: WPDJ01000180.1 Shigella flexneri strain 2017ZH007 NODE_180_length_5707_cov_505.859_ID_62834, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPDJ01000260.1 Shigella flexneri strain 2017ZH007 NODE_260_length_2271_cov_436.305_ID_62994, whole genome shotgun sequence (2271 bp)
Overview 1 RT 1: 92-2268 bp Neighborhood of RT #1 [92, 2268] RVT-GII GIIM Feature: gene Location: 92-1615 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 365-1097 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 65-1097 bp Feature: domain Description: GIIM Note: maturase Location: 1172-1370 bp Feature: domain Description: GIIM Note: maturase Location: 1172-13 70 bp Feature: gene Location: 1909-2268 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)