myRT

myRT report for GCA_009742035.1_ASM974203v1

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Seq: WPDM01000170.1 Shigella flexneri strain 2016ZH003 NODE_170_length_6016_cov_385.571_ID_64311, whole genome shotgun sequence (6016 bp)
Overview 1 RT 1: 3151-5804 bp Neighborhood of RT #1 [3151, 5804] COG3547 RVT-GII GIIM Feature: gene Location: 3151-3636 bp Feature: domain Description: COG3547 Location: 3169-3622 bp Feature: domain Description: COG3547 Location: 31 69-3622 bp Feature: gene Location: 3732-3899 bp Feature: gene Location: 3925-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 -4765 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: gene Location: 5153-5536 bp Feature: gene Location: 5610-5804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPDM01000176.1 Shigella flexneri strain 2016ZH003 NODE_176_length_5707_cov_682.855_ID_64323, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPDM01000035.1 Shigella flexneri strain 2016ZH003 NODE_35_length_35785_cov_343.951_ID_64041, whole genome shotgun sequence (35785 bp)
Overview 1 RT 1: 28705-35739 bp Neighborhood of RT #1 [28705, 35739] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 28705-32823 bp Feature: domain Description: ESPR Location: 28708-28777 bp Feature: domain Description: ESPR Location: 28708-28777 bp Feature: domain Description: Peptidase_S6 Location: 28858-31030 bp Feature: domain Description: Peptidase_S6 Location: 28858-3 103 0 bp Feature: domain Description: autotrans_barl Location: 31594-32821 bp Feature: domain Description: autotrans_barl Location: 3 1594-3 2821 bp Feature: gene Location: 32988-33374 bp Feature: domain Description: PHA02517 Location: 32991-33372 bp Feature: domain Description: PHA02517 Location: 3 2991-3 3 3 72 bp Feature: gene Location: 33551-35074 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33824-34556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 824-3 4556 bp Feature: domain Description: GIIM Note: maturase Location: 34631-34829 bp Feature: domain Description: GIIM Note: maturase Location: 3 463 1-3 4829 bp Feature: gene Location: 35368-35739 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)