myRT

myRT report for GCA_009742045.1_ASM974204v1

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Seq: WPDQ01000172.1 Shigella flexneri 2a strain 2015ZH012 NODE_172_length_5856_cov_381.745_ID_63127, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3-2692 bp Neighborhood of RT #1 [3, 2706] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-236 bp Feature: gene Location: 715-1932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901 -1 555 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1855 bp Feature: domain Description: GIIM Note: maturase Location: 1 633-1 855 bp Feature: gene Location: 2048-2194 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2060-2171 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2060-21 71 bp Feature: gene Location: 2221-2706 bp Feature: domain Description: COG3547 Location: 2239-2692 bp Feature: domain Description: COG3547 Location: 2239-2692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPDQ01000174.1 Shigella flexneri 2a strain 2015ZH012 NODE_174_length_5707_cov_865.115_ID_63131, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPDQ01000248.1 Shigella flexneri 2a strain 2015ZH012 NODE_248_length_2272_cov_908.101_ID_63279, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 1-1935 bp Neighborhood of RT #1 [1, 2180] RVT-GII GIIM Feature: gene Location: 1-363 bp Feature: gene Location: 657-2180 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 930-1662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 0-1662 bp Feature: domain Description: GIIM Note: maturase Location: 1737-1935 bp Feature: domain Description: GIIM Note: maturase Location: 173 7-193 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)