myRT

myRT report for GCA_009742055.1_ASM974205v1

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Seq: WPDO01000106.1 Shigella flexneri 2a strain 2015ZH052 NODE_106_length_12446_cov_214.289_ID_60621, whole genome shotgun sequence (12446 bp)
Overview 1 RT 1: 7290-10425 bp Neighborhood of RT #1 [7290, 10425] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 7290-8039 bp Feature: domain Description: PAP2_acid_phosphatase Location: 7365-8019 bp Feature: domain Description: PAP2_acid_phosphatase Location: 7365-801 9 bp Feature: gene Location: 8435-8635 bp Feature: domain Description: Tra5 Location: 8444-8618 bp Feature: domain Description: Tra5 Location: 8444-861 8 bp Feature: gene Location: 8648-9451 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8948-9443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8948-9443 bp Feature: gene Location: 9504-9830 bp Feature: domain Description: GIIM Note: maturase Location: 9537-9756 bp Feature: domain Description: GIIM Note: maturase Location: 9537-9756 bp Feature: gene Location: 10183-10425 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PAP2_acid_phosphatase (cd03397), Tra5 (COG2801), RVT-GII, GIIM (pfam08388)

Seq: WPDO01000171.1 Shigella flexneri 2a strain 2015ZH052 NODE_171_length_5856_cov_143.809_ID_60751, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3-2692 bp Neighborhood of RT #1 [3, 2706] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-236 bp Feature: gene Location: 715-1932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1555 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1855 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1855 bp Feature: gene Location: 2048-2194 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2060-2171 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2 060-2 171 bp Feature: gene Location: 2221-2706 bp Feature: domain Description: COG3547 Location: 2239-2692 bp Feature: domain Description: COG3547 Location: 2 2 39-2 692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPDO01000243.1 Shigella flexneri 2a strain 2015ZH052 NODE_243_length_2272_cov_2031.09_ID_60895, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)