myRT

myRT report for GCA_009742065.1_ASM974206v1

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Seq: WPDP01000179.1 Shigella flexneri 2a strain 2015ZH014 NODE_179_length_5707_cov_648.204_ID_67799, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1 364-1 538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 868-2363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPDP01000264.1 Shigella flexneri 2a strain 2015ZH014 NODE_264_length_2193_cov_384.491_ID_67969, whole genome shotgun sequence (2193 bp)
Overview 1 RT 1: 1-2037 bp Neighborhood of RT #1 [1, 2037] RVT-GII GIIM Feature: gene Location: 1-132 bp Feature: gene Location: 158-1291 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 260-914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 60-914 bp Feature: domain Description: GIIM Note: maturase Location: 992-1214 bp Feature: domain Description: GIIM Note: maturase Location: 992 -12 14 bp Feature: gene Location: 1843-2037 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: WPDP01000035.1 Shigella flexneri 2a strain 2015ZH014 NODE_35_length_35611_cov_305.364_ID_67511, whole genome shotgun sequence (35611 bp)
Overview 1 RT 1: 20-7052 bp Neighborhood of RT #1 [20, 7054] RVT-GII GIIM PHA02517 ESPR Peptidase_S6 autotrans_barl Feature: gene Location: 20-391 bp Feature: gene Location: 685-2208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1690 bp Feature: domain Description: GIIM Note: maturase Location: 1765-1963 bp Feature: domain Description: GIIM Note: maturase Location: 1765-1963 bp Feature: gene Location: 2385-2771 bp Feature: domain Description: PHA02517 Location: 2388-2769 bp Feature: domain Description: PHA02517 Location: 23 88-2769 bp Feature: gene Location: 2936-7054 bp Feature: domain Description: ESPR Location: 2939-3008 bp Feature: domain Description: ESPR Location: 293 9-3 008 bp Feature: domain Description: Peptidase_S6 Location: 3089-5261 bp Feature: domain Description: Peptidase_S6 Location: 3 089-5261 bp Feature: domain Description: autotrans_barl Location: 5825-7052 bp Feature: domain Description: autotrans_barl Location: 5825-7052 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), RVT-GII, GIIM (pfam08388)