myRT

myRT report for GCA_009742125.1_ASM974212v1

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Seq: WPDT01000172.1 Shigella flexneri 2a strain 2014ZH087 NODE_172_length_5855_cov_386.254_ID_64705, whole genome shotgun sequence (5855 bp)
Overview 1 RT 1: 3151-5854 bp Neighborhood of RT #1 [3151, 5854] COG3547 RVT-GII GIIM Feature: gene Location: 3151-3636 bp Feature: domain Description: COG3547 Location: 3169-3622 bp Feature: domain Description: COG3547 Location: 31 69-3622 bp Feature: gene Location: 3732-3899 bp Feature: gene Location: 3925-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 -4765 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: gene Location: 5153-5536 bp Feature: gene Location: 5621-5854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPDT01000176.1 Shigella flexneri 2a strain 2014ZH087 NODE_176_length_5708_cov_899.015_ID_64713, whole genome shotgun sequence (5708 bp)
Overview 1 RT 1: 212-3347 bp Neighborhood of RT #1 [212, 3347] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 212-961 bp Feature: domain Description: PAP2_acid_phosphatase Location: 287-941 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 87-941 bp Feature: gene Location: 1357-1557 bp Feature: domain Description: Tra5 Location: 1366-1540 bp Feature: domain Description: Tra5 Location: 1366-1540 bp Feature: gene Location: 1570-2373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870-2365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870-2 365 bp Feature: gene Location: 2426-2752 bp Feature: domain Description: GIIM Note: maturase Location: 2459-2678 bp Feature: domain Description: GIIM Note: maturase Location: 2 459-2 678 bp Feature: gene Location: 3105-3347 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPDT01000243.1 Shigella flexneri 2a strain 2014ZH087 NODE_243_length_2325_cov_2360.69_ID_64847, whole genome shotgun sequence (2325 bp)
Overview 1 RT 1: 146-2322 bp Neighborhood of RT #1 [146, 2322] RVT-GII GIIM Feature: gene Location: 146-1669 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1151 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 419-1151 bp Feature: domain Description: GIIM Note: maturase Location: 1226-1424 bp Feature: domain Description: GIIM Note: maturase Location: 1226-1424 bp Feature: gene Location: 1963-2322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)