myRT

myRT report for GCA_009742145.1_ASM974214v1

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Seq: WPDS01000174.1 Shigella flexneri 2a strain 2014ZH094 NODE_174_length_5855_cov_319.275_ID_65492, whole genome shotgun sequence (5855 bp)
Overview 1 RT 1: 2-2691 bp Neighborhood of RT #1 [2, 2705] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 2-235 bp Feature: gene Location: 714-1931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900-1554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 900-1 554 bp Feature: domain Description: GIIM Note: maturase Location: 1632-1854 bp Feature: domain Description: GIIM Note: maturase Location: 1 632-1 854 bp Feature: gene Location: 2047-2193 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2059-2170 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2059-21 70 bp Feature: gene Location: 2220-2705 bp Feature: domain Description: COG3547 Location: 2238-2691 bp Feature: domain Description: COG3547 Location: 2238-2691 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPDS01000178.1 Shigella flexneri 2a strain 2014ZH094 NODE_178_length_5707_cov_738.582_ID_65500, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPDS01000251.1 Shigella flexneri 2a strain 2014ZH094 NODE_251_length_2272_cov_1260.24_ID_65646, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)