myRT

myRT report for GCA_009742155.1_ASM974215v1

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Seq: WPDW01000179.1 Shigella flexneri 2a strain 2014ZH034 NODE_179_length_5856_cov_339.323_ID_68615, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3-2692 bp Neighborhood of RT #1 [3, 2706] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-236 bp Feature: gene Location: 715-1932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901 -1 555 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1855 bp Feature: domain Description: GIIM Note: maturase Location: 1 633-1 855 bp Feature: gene Location: 2048-2194 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2060-2171 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2060-21 71 bp Feature: gene Location: 2221-2706 bp Feature: domain Description: COG3547 Location: 2239-2692 bp Feature: domain Description: COG3547 Location: 2239-2692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPDW01000182.1 Shigella flexneri 2a strain 2014ZH034 NODE_182_length_5707_cov_735.551_ID_68621, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 1355-3345 bp Neighborhood of RT #1 [1355, 3345] Tra5 group_II_RT_mat RVT-GII GIIM Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-1846 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1700-1844 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 1700-1844 bp Feature: gene Location: 1859-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), group_II_RT_mat (TIGR04416), RVT-GII, GIIM (pfam08388)

Seq: WPDW01000263.1 Shigella flexneri 2a strain 2014ZH034 NODE_263_length_2272_cov_1319.2_ID_68783, whole genome shotgun sequence (2272 bp)
Overview 1 RT 1: 93-2269 bp Neighborhood of RT #1 [93, 2269] RVT-GII GIIM Feature: gene Location: 93-1616 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366-1098 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 66-1098 bp Feature: domain Description: GIIM Note: maturase Location: 1173-1371 bp Feature: domain Description: GIIM Note: maturase Location: 1173 -13 71 bp Feature: gene Location: 1910-2269 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)