myRT

myRT report for GCA_009742225.1_ASM974222v1

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Seq: WPDY01000173.1 Shigella flexneri 2a strain 2014ZH015 NODE_173_length_5856_cov_333.121_ID_64690, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3151-5854 bp Neighborhood of RT #1 [3151, 5854] COG3547 RVT-GII GIIM Feature: gene Location: 3151-3636 bp Feature: domain Description: COG3547 Location: 3169-3622 bp Feature: domain Description: COG3547 Location: 31 69-3622 bp Feature: gene Location: 3732-3899 bp Feature: gene Location: 3925-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 -4765 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: gene Location: 5153-5536 bp Feature: gene Location: 5621-5854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPDY01000177.1 Shigella flexneri 2a strain 2014ZH015 NODE_177_length_5707_cov_733.961_ID_64698, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPDY01000033.1 Shigella flexneri 2a strain 2014ZH015 NODE_33_length_35638_cov_270.481_ID_64410, whole genome shotgun sequence (35638 bp)
Overview 1 RT 1: 28558-35592 bp Neighborhood of RT #1 [28558, 35592] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 28558-32676 bp Feature: domain Description: ESPR Location: 28561-28630 bp Feature: domain Description: ESPR Location: 28561-2863 0 bp Feature: domain Description: Peptidase_S6 Location: 28711-30883 bp Feature: domain Description: Peptidase_S6 Location: 28711-3 0883 bp Feature: domain Description: autotrans_barl Location: 31447-32674 bp Feature: domain Description: autotrans_barl Location: 3 1447-3 2674 bp Feature: gene Location: 32841-33227 bp Feature: domain Description: PHA02517 Location: 32844-33225 bp Feature: domain Description: PHA02517 Location: 3 2844-3 3 225 bp Feature: gene Location: 33404-34927 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33677-34409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 3 677-3 4409 bp Feature: domain Description: GIIM Note: maturase Location: 34484-34682 bp Feature: domain Description: GIIM Note: maturase Location: 3 4484-3 4682 bp Feature: gene Location: 35221-35592 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)