myRT

myRT report for GCA_009742245.1_ASM974224v1

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Seq: WPEB01000176.1 Shigella flexneri 2a strain 2014ZH005 NODE_176_length_5889_cov_459.517_ID_64090, whole genome shotgun sequence (5889 bp)
Overview 1 RT 1: 3151-5887 bp Neighborhood of RT #1 [3151, 5887] COG3547 RVT-GII GIIM Feature: gene Location: 3151-3636 bp Feature: domain Description: COG3547 Location: 3169-3622 bp Feature: domain Description: COG3547 Location: 31 69-3622 bp Feature: gene Location: 3732-3899 bp Feature: gene Location: 3925-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 -4765 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: gene Location: 5153-5536 bp Feature: gene Location: 5621-5887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPEB01000179.1 Shigella flexneri 2a strain 2014ZH005 NODE_179_length_5707_cov_869.045_ID_64096, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPEB01000231.1 Shigella flexneri 2a strain 2014ZH005 NODE_231_length_2733_cov_1166.29_ID_64200, whole genome shotgun sequence (2733 bp)
Overview 1 RT 1: 2-2687 bp Neighborhood of RT #1 [2, 2687] PHA02517 RVT-GII GIIM Feature: gene Location: 2-322 bp Feature: domain Description: PHA02517 Location: 5-323 bp Feature: domain Description: PHA02517 Location: 5-3 23 bp Feature: gene Location: 499-2022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772-1504 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 772-1504 bp Feature: domain Description: GIIM Note: maturase Location: 1579-1777 bp Feature: domain Description: GIIM Note: maturase Location: 1579-1777 bp Feature: gene Location: 2316-2687 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)