myRT

myRT report for GCA_009742375.1_ASM974237v1

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Seq: WPEH01000174.1 Shigella flexneri strain 2013ZH104 NODE_174_length_5856_cov_497.967_ID_64538, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3-2692 bp Neighborhood of RT #1 [3, 2706] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-236 bp Feature: gene Location: 715-1932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901 -1 555 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1855 bp Feature: domain Description: GIIM Note: maturase Location: 1 633-1 855 bp Feature: gene Location: 2048-2194 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2060-2171 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2060-21 71 bp Feature: gene Location: 2221-2706 bp Feature: domain Description: COG3547 Location: 2239-2692 bp Feature: domain Description: COG3547 Location: 2239-2692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPEH01000182.1 Shigella flexneri strain 2013ZH104 NODE_182_length_5424_cov_709.499_ID_64554, whole genome shotgun sequence (5424 bp)
Overview 1 RT 1: 212-3290 bp Neighborhood of RT #1 [212, 3290] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 212-961 bp Feature: domain Description: PAP2_acid_phosphatase Location: 287-941 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 87-941 bp Feature: gene Location: 1357-1557 bp Feature: domain Description: Tra5 Location: 1366-1540 bp Feature: domain Description: Tra5 Location: 1366-1540 bp Feature: gene Location: 1570-2373 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870-2365 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1870-2 365 bp Feature: gene Location: 2426-2752 bp Feature: domain Description: GIIM Note: maturase Location: 2459-2678 bp Feature: domain Description: GIIM Note: maturase Location: 2 459-2 678 bp Feature: gene Location: 3105-3290 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPEH01000233.1 Shigella flexneri strain 2013ZH104 NODE_233_length_2736_cov_382.9_ID_64656, whole genome shotgun sequence (2736 bp)
Overview 1 RT 1: 2-2690 bp Neighborhood of RT #1 [2, 2690] PHA02517 RVT-GII GIIM Feature: gene Location: 2-325 bp Feature: domain Description: PHA02517 Location: 5-326 bp Feature: domain Description: PHA02517 Location: 5-3 26 bp Feature: gene Location: 502-2025 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1507 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 775-1507 bp Feature: domain Description: GIIM Note: maturase Location: 1582-1780 bp Feature: domain Description: GIIM Note: maturase Location: 1582-1780 bp Feature: gene Location: 2319-2690 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)