myRT

myRT report for GCA_009742415.1_ASM974241v1

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Seq: WPEL01000156.1 Shigella flexneri 2a strain 2013ZH077 NODE_156_length_7232_cov_279.474_ID_59958, whole genome shotgun sequence (7232 bp)
Overview 1 RT 1: 146-2666 bp Neighborhood of RT #1 [146, 2686] GIIM RVT-GII Tra5 PAP2_acid_phosphatase Feature: gene Location: 146-517 bp Feature: domain Description: GIIM Note: maturase Location: 224-443 bp Feature: domain Description: GIIM Note: maturase Location: 224-443 bp Feature: gene Location: 525-1328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825-1320 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 825-1 320 bp Feature: gene Location: 1341-1541 bp Feature: domain Description: Tra5 Location: 1350-1524 bp Feature: domain Description: Tra5 Location: 1 350-1 524 bp Feature: gene Location: 1937-2686 bp Feature: domain Description: PAP2_acid_phosphatase Location: 2012-2666 bp Feature: domain Description: PAP2_acid_phosphatase Location: 201 2-2666 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), GIIM (pfam08388), PAP2_acid_phosphatase (cd03397), RVT-GII

Seq: WPEL01000171.1 Shigella flexneri 2a strain 2013ZH077 NODE_171_length_6183_cov_150.93_ID_59988, whole genome shotgun sequence (6183 bp)
Overview 1 RT 1: 3478-6181 bp Neighborhood of RT #1 [3478, 6181] COG3547 RVT-GII GIIM Feature: gene Location: 3478-3963 bp Feature: domain Description: COG3547 Location: 3496-3949 bp Feature: domain Description: COG3547 Location: 3496-3949 bp Feature: gene Location: 4059-4226 bp Feature: gene Location: 4252-5469 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4438-5092 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4438-5092 bp Feature: domain Description: GIIM Note: maturase Location: 5170-5392 bp Feature: domain Description: GIIM Note: maturase Location: 5170-5392 bp Feature: gene Location: 5480-5863 bp Feature: gene Location: 5948-6181 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPEL01000090.1 Shigella flexneri 2a strain 2013ZH077 NODE_90_length_16590_cov_293.86_ID_59826, whole genome shotgun sequence (16590 bp)
Overview 1 RT 1: 9510-16544 bp Neighborhood of RT #1 [9510, 16544] ESPR Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 9510-13628 bp Feature: domain Description: ESPR Location: 9513-9582 bp Feature: domain Description: ESPR Location: 9513 -9582 bp Feature: domain Description: Peptidase_S6 Location: 9663-11835 bp Feature: domain Description: Peptidase_S6 Location: 9663 -1183 5 bp Feature: domain Description: autotrans_barl Location: 12399-13626 bp Feature: domain Description: autotrans_barl Location: 123 99-13 626 bp Feature: gene Location: 13793-14179 bp Feature: domain Description: PHA02517 Location: 13796-14177 bp Feature: domain Description: PHA02517 Location: 13 796-14177 bp Feature: gene Location: 14356-15879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14629-15361 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 14629-153 61 bp Feature: domain Description: GIIM Note: maturase Location: 15436-15634 bp Feature: domain Description: GIIM Note: maturase Location: 1543 6-1563 4 bp Feature: gene Location: 16173-16544 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), ESPR (pfam13018), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414)