myRT

myRT report for GCA_009742435.1_ASM974243v1

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Seq: WPEM01000173.1 Shigella flexneri strain 2013ZH076 NODE_173_length_5856_cov_480.814_ID_64663, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3-2692 bp Neighborhood of RT #1 [3, 2706] RVT-GII GIIM DDE_Tnp_IS66_C COG3547 Feature: gene Location: 3-236 bp Feature: gene Location: 715-1932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901-1555 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 901 -1 555 bp Feature: domain Description: GIIM Note: maturase Location: 1633-1855 bp Feature: domain Description: GIIM Note: maturase Location: 1 633-1 855 bp Feature: gene Location: 2048-2194 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2060-2171 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2060-21 71 bp Feature: gene Location: 2221-2706 bp Feature: domain Description: COG3547 Location: 2239-2692 bp Feature: domain Description: COG3547 Location: 2239-2692 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66_C (pfam13817), COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPEM01000177.1 Shigella flexneri strain 2013ZH076 NODE_177_length_5707_cov_941.725_ID_64671, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1358-1538 bp Feature: domain Description: Tra5 Location: 1358-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPEM01000224.1 Shigella flexneri strain 2013ZH076 NODE_224_length_3129_cov_980.05_ID_64765, whole genome shotgun sequence (3129 bp)
Overview 1 RT 1: 3-2980 bp Neighborhood of RT #1 [3, 3126] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 3-344 bp Feature: domain Description: PHA02517 Location: 6-345 bp Feature: domain Description: PHA02517 Location: 6-3 45 bp Feature: gene Location: 521-2044 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1526 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 794-1526 bp Feature: domain Description: GIIM Note: maturase Location: 1601-1799 bp Feature: domain Description: GIIM Note: maturase Location: 1601-1799 bp Feature: gene Location: 2338-2709 bp Feature: gene Location: 2758-3126 bp Feature: domain Description: PHA02517 Location: 2833-2980 bp Feature: domain Description: PHA02517 Location: 283 3 -2980 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)