myRT

myRT report for GCA_009742545.1_ASM974254v1

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Seq: WPET01000174.1 Shigella flexneri strain 2013ZH043 NODE_174_length_5856_cov_406.716_ID_75210, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3151-5854 bp Neighborhood of RT #1 [3151, 5854] COG3547 RVT-GII GIIM Feature: gene Location: 3151-3636 bp Feature: domain Description: COG3547 Location: 3169-3622 bp Feature: domain Description: COG3547 Location: 31 69-3622 bp Feature: gene Location: 3732-3899 bp Feature: gene Location: 3925-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 -4765 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: gene Location: 5153-5536 bp Feature: gene Location: 5621-5854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPET01000177.1 Shigella flexneri strain 2013ZH043 NODE_177_length_5707_cov_813.846_ID_75216, whole genome shotgun sequence (5707 bp)
Overview 1 RT 1: 210-3345 bp Neighborhood of RT #1 [210, 3345] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Feature: gene Location: 3103-3345 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPET01000286.1 Shigella flexneri strain 2013ZH043 NODE_286_length_1786_cov_417.237_ID_75436, whole genome shotgun sequence (1786 bp)
Overview 1 RT 1: 3-1439 bp Neighborhood of RT #1 [3, 1684] RVT-GII GIIM Feature: gene Location: 3-137 bp Feature: gene Location: 161-1684 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 434-1166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43 4-1166 bp Feature: domain Description: GIIM Note: maturase Location: 1241-1439 bp Feature: domain Description: GIIM Note: maturase Location: 1241-143 9 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)