myRT

myRT report for GCA_009742805.1_ASM974280v1

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Seq: WPEC01000174.1 Shigella flexneri 2a strain 2014ZH004 NODE_174_length_5856_cov_524.526_ID_65212, whole genome shotgun sequence (5856 bp)
Overview 1 RT 1: 3151-5854 bp Neighborhood of RT #1 [3151, 5854] COG3547 RVT-GII GIIM Feature: gene Location: 3151-3636 bp Feature: domain Description: COG3547 Location: 3169-3622 bp Feature: domain Description: COG3547 Location: 31 69-3622 bp Feature: gene Location: 3732-3899 bp Feature: gene Location: 3925-5142 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4111-4765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 1 -4765 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: domain Description: GIIM Note: maturase Location: 4843-5065 bp Feature: gene Location: 5153-5536 bp Feature: gene Location: 5621-5854 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), RVT-GII, GIIM (pfam08388)

Seq: WPEC01000229.1 Shigella flexneri 2a strain 2014ZH004 NODE_229_length_2895_cov_887.038_ID_65322, whole genome shotgun sequence (2895 bp)
Overview 1 RT 1: 210-2676 bp Neighborhood of RT #1 [210, 2750] PAP2_acid_phosphatase Tra5 RVT-GII GIIM Feature: gene Location: 210-959 bp Feature: domain Description: PAP2_acid_phosphatase Location: 285-939 bp Feature: domain Description: PAP2 _acid_phosphatase Location: 2 85-939 bp Feature: gene Location: 1355-1555 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: domain Description: Tra5 Location: 1364-1538 bp Feature: gene Location: 1568-2371 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1868-2 363 bp Feature: gene Location: 2424-2750 bp Feature: domain Description: GIIM Note: maturase Location: 2457-2676 bp Feature: domain Description: GIIM Note: maturase Location: 2 457-2 676 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), RVT-GII, PAP2_acid_phosphatase (cd03397), GIIM (pfam08388)

Seq: WPEC01000252.1 Shigella flexneri 2a strain 2014ZH004 NODE_252_length_2310_cov_679.761_ID_65368, whole genome shotgun sequence (2310 bp)
Overview 1 RT 1: 20-1963 bp Neighborhood of RT #1 [20, 2208] RVT-GII GIIM Feature: gene Location: 20-391 bp Feature: gene Location: 685-2208 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1690 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 958-1690 bp Feature: domain Description: GIIM Note: maturase Location: 1765-1963 bp Feature: domain Description: GIIM Note: maturase Location: 1765-1963 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)